Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7320 and GFF7321 overlap by 1 nucleotides GFF7321 and GFF7322 are separated by 98 nucleotides GFF7322 and GFF7323 overlap by 4 nucleotides
GFF7320 - tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3), at 14,776 to 16,122
GFF7320
GFF7321 - Sensor histidine kinase GlrK, at 16,122 to 17,549
GFF7321
GFF7322 - hypothetical protein, at 17,648 to 18,259
GFF7322
GFF7323 - Transcriptional response regulatory protein GlrR, at 18,256 to 19,644
GFF7323
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.244 kb on + strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.245 kb on - strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.253 kb on + strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.254 kb on - strand, within GFF7320 at 15.268 kb on + strand, within GFF7320 at 15.268 kb on + strand, within GFF7320 at 15.268 kb on + strand, within GFF7320 at 15.269 kb on - strand, within GFF7320 at 15.269 kb on - strand, within GFF7320 at 15.269 kb on - strand, within GFF7320 at 15.383 kb on - strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.439 kb on + strand, within GFF7320 at 15.440 kb on - strand, within GFF7320 at 15.440 kb on - strand, within GFF7320 at 15.440 kb on - strand, within GFF7320 at 15.440 kb on - strand, within GFF7320 at 15.440 kb on - strand, within GFF7320 at 15.475 kb on + strand, within GFF7320 at 15.475 kb on + strand, within GFF7320 at 15.476 kb on - strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.523 kb on + strand, within GFF7320 at 15.524 kb on - strand, within GFF7320 at 15.524 kb on - strand, within GFF7320 at 15.524 kb on - strand, within GFF7320 at 15.524 kb on - strand, within GFF7320 at 15.610 kb on + strand, within GFF7320 at 15.610 kb on + strand, within GFF7320 at 15.610 kb on + strand, within GFF7320 at 15.611 kb on - strand, within GFF7320 at 15.611 kb on - strand, within GFF7320 at 15.611 kb on - strand, within GFF7320 at 15.611 kb on - strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.625 kb on + strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 15.626 kb on - strand, within GFF7320 at 16.066 kb on + strand at 16.066 kb on + strand at 16.066 kb on + strand at 16.066 kb on + strand at 16.066 kb on + strand at 16.067 kb on - strand at 16.067 kb on - strand at 16.067 kb on - strand at 16.067 kb on - strand at 16.230 kb on + strand at 16.230 kb on + strand at 16.230 kb on + strand at 16.230 kb on + strand at 16.231 kb on - strand at 16.231 kb on - strand at 16.231 kb on - strand at 16.231 kb on - strand at 16.352 kb on - strand, within GFF7321 at 16.455 kb on + strand, within GFF7321 at 16.456 kb on - strand, within GFF7321 at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.463 kb on + strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.464 kb on - strand at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.843 kb on + strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 17.844 kb on - strand, within GFF7322 at 18.074 kb on + strand, within GFF7322 at 18.074 kb on + strand, within GFF7322 at 18.075 kb on - strand, within GFF7322 at 18.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 15,244 + GFF7320 0.35 -0.6 15,244 + GFF7320 0.35 -0.4 15,244 + GFF7320 0.35 -0.3 15,244 + GFF7320 0.35 -1.2 15,244 + GFF7320 0.35 -1.4 15,244 + GFF7320 0.35 -1.2 15,244 + GFF7320 0.35 +0.0 15,245 - GFF7320 0.35 +0.5 15,245 - GFF7320 0.35 -0.0 15,245 - GFF7320 0.35 +1.0 15,245 - GFF7320 0.35 +0.5 15,245 - GFF7320 0.35 -0.5 15,245 - GFF7320 0.35 -0.4 15,245 - GFF7320 0.35 -1.2 15,245 - GFF7320 0.35 -1.6 15,253 + GFF7320 0.35 -0.5 15,253 + GFF7320 0.35 -2.1 15,253 + GFF7320 0.35 +0.4 15,253 + GFF7320 0.35 -0.9 15,253 + GFF7320 0.35 +0.4 15,253 + GFF7320 0.35 +0.8 15,253 + GFF7320 0.35 -0.1 15,253 + GFF7320 0.35 +0.9 15,254 - GFF7320 0.35 -0.2 15,254 - GFF7320 0.35 +0.1 15,254 - GFF7320 0.35 +0.8 15,254 - GFF7320 0.35 -0.8 15,254 - GFF7320 0.35 -1.7 15,254 - GFF7320 0.35 -0.1 15,268 + GFF7320 0.37 -0.2 15,268 + GFF7320 0.37 -0.2 15,268 + GFF7320 0.37 -0.2 15,269 - GFF7320 0.37 -0.4 15,269 - GFF7320 0.37 -0.4 15,269 - GFF7320 0.37 -0.1 15,383 - GFF7320 0.45 +0.3 15,439 + GFF7320 0.49 -0.3 15,439 + GFF7320 0.49 +0.2 15,439 + GFF7320 0.49 -0.4 15,439 + GFF7320 0.49 -0.5 15,439 + GFF7320 0.49 +0.3 15,439 + GFF7320 0.49 +0.4 15,439 + GFF7320 0.49 -0.2 15,439 + GFF7320 0.49 -0.2 15,439 + GFF7320 0.49 -0.2 15,440 - GFF7320 0.49 +0.2 15,440 - GFF7320 0.49 -1.3 15,440 - GFF7320 0.49 -0.5 15,440 - GFF7320 0.49 -1.8 15,440 - GFF7320 0.49 -0.1 15,475 + GFF7320 0.52 +0.4 15,475 + GFF7320 0.52 +1.0 15,476 - GFF7320 0.52 -1.0 15,523 + GFF7320 0.55 -0.2 15,523 + GFF7320 0.55 -0.5 15,523 + GFF7320 0.55 +0.2 15,523 + GFF7320 0.55 -0.3 15,523 + GFF7320 0.55 -1.0 15,523 + GFF7320 0.55 +0.8 15,524 - GFF7320 0.56 -0.6 15,524 - GFF7320 0.56 +2.8 15,524 - GFF7320 0.56 -0.0 15,524 - GFF7320 0.56 +0.1 15,610 + GFF7320 0.62 +1.4 15,610 + GFF7320 0.62 +0.1 15,610 + GFF7320 0.62 +0.4 15,611 - GFF7320 0.62 -1.1 15,611 - GFF7320 0.62 +1.2 15,611 - GFF7320 0.62 +0.8 15,611 - GFF7320 0.62 -0.3 15,625 + GFF7320 0.63 +3.8 15,625 + GFF7320 0.63 -0.6 15,625 + GFF7320 0.63 +0.3 15,625 + GFF7320 0.63 -0.6 15,625 + GFF7320 0.63 -1.2 15,625 + GFF7320 0.63 +0.7 15,625 + GFF7320 0.63 -0.9 15,625 + GFF7320 0.63 +0.2 15,626 - GFF7320 0.63 -0.0 15,626 - GFF7320 0.63 -0.2 15,626 - GFF7320 0.63 -0.4 15,626 - GFF7320 0.63 -0.3 15,626 - GFF7320 0.63 +0.6 15,626 - GFF7320 0.63 -0.3 15,626 - GFF7320 0.63 +0.1 16,066 + -0.4 16,066 + -0.2 16,066 + +0.1 16,066 + -0.3 16,066 + -0.8 16,067 - -1.0 16,067 - -0.3 16,067 - +1.9 16,067 - +0.2 16,230 + -0.9 16,230 + -0.1 16,230 + +0.2 16,230 + -1.8 16,231 - +0.0 16,231 - -1.2 16,231 - -2.0 16,231 - -0.4 16,352 - GFF7321 0.16 -1.6 16,455 + GFF7321 0.23 -0.6 16,456 - GFF7321 0.23 -0.6 17,463 + +0.0 17,463 + +0.5 17,463 + +2.1 17,463 + -1.0 17,463 + -0.8 17,463 + -0.5 17,463 + -0.3 17,463 + +0.7 17,463 + -0.7 17,463 + +0.2 17,463 + -0.3 17,463 + +0.2 17,463 + -0.9 17,464 - -0.8 17,464 - -0.3 17,464 - -1.9 17,464 - -1.0 17,464 - -0.8 17,464 - -0.0 17,464 - -0.2 17,464 - +0.3 17,464 - -0.3 17,464 - -0.9 17,464 - +2.1 17,464 - -0.1 17,843 + GFF7322 0.32 +0.2 17,843 + GFF7322 0.32 +0.3 17,843 + GFF7322 0.32 -0.6 17,843 + GFF7322 0.32 -1.8 17,843 + GFF7322 0.32 -0.2 17,844 - GFF7322 0.32 -1.2 17,844 - GFF7322 0.32 +0.4 17,844 - GFF7322 0.32 -2.7 17,844 - GFF7322 0.32 -0.9 18,074 + GFF7322 0.70 +0.2 18,074 + GFF7322 0.70 -0.5 18,075 - GFF7322 0.70 -0.8 18,264 + -0.1
Or see this region's nucleotide sequence