Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7151 and GFF7152 are separated by 146 nucleotides GFF7152 and GFF7153 overlap by 4 nucleotides GFF7153 and GFF7154 are separated by 35 nucleotides
GFF7151 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 16,895 to 17,809
GFF7151
GFF7152 - no description, at 17,956 to 18,621
GFF7152
GFF7153 - no description, at 18,618 to 18,746
GFF7153
GFF7154 - Toxin HigB / Protein kinase domain of HipA, at 18,782 to 20,107
GFF7154
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.256 kb on + strand, within GFF7151 at 17.256 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.383 kb on - strand, within GFF7151 at 17.383 kb on - strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.853 kb on + strand at 17.860 kb on - strand at 17.869 kb on - strand at 17.869 kb on - strand at 17.870 kb on + strand at 17.870 kb on + strand at 17.881 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 18.057 kb on + strand, within GFF7152 at 18.060 kb on - strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.783 kb on + strand at 18.783 kb on + strand at 18.783 kb on + strand at 18.784 kb on - strand at 18.784 kb on - strand at 18.784 kb on - strand at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.118 kb on + strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 17,100 + GFF7151 0.22 +0.7 17,100 + GFF7151 0.22 -0.3 17,100 + GFF7151 0.22 -0.0 17,100 + GFF7151 0.22 -0.3 17,100 + GFF7151 0.22 +0.1 17,100 + GFF7151 0.22 -0.4 17,100 + GFF7151 0.22 -0.3 17,101 - GFF7151 0.23 +1.1 17,101 - GFF7151 0.23 -0.1 17,101 - GFF7151 0.23 -0.9 17,101 - GFF7151 0.23 -0.1 17,101 - GFF7151 0.23 +0.0 17,101 - GFF7151 0.23 +0.5 17,101 - GFF7151 0.23 -0.2 17,145 + GFF7151 0.27 +0.3 17,145 + GFF7151 0.27 +0.9 17,145 + GFF7151 0.27 -0.5 17,145 + GFF7151 0.27 +0.1 17,145 + GFF7151 0.27 -0.2 17,145 + GFF7151 0.27 -1.8 17,145 + GFF7151 0.27 +0.2 17,145 + GFF7151 0.27 -1.2 17,145 + GFF7151 0.27 -0.5 17,145 + GFF7151 0.27 -0.4 17,145 + GFF7151 0.27 -0.6 17,145 + GFF7151 0.27 +0.2 17,146 - GFF7151 0.27 +0.8 17,146 - GFF7151 0.27 -1.1 17,146 - GFF7151 0.27 -0.5 17,146 - GFF7151 0.27 +0.9 17,146 - GFF7151 0.27 -0.7 17,146 - GFF7151 0.27 +0.6 17,146 - GFF7151 0.27 +0.7 17,146 - GFF7151 0.27 +0.7 17,146 - GFF7151 0.27 +0.5 17,256 + GFF7151 0.39 -0.2 17,256 + GFF7151 0.39 +0.9 17,382 + GFF7151 0.53 -1.2 17,382 + GFF7151 0.53 -0.5 17,382 + GFF7151 0.53 +0.4 17,383 - GFF7151 0.53 -0.9 17,383 - GFF7151 0.53 -0.6 17,400 + GFF7151 0.55 -0.5 17,400 + GFF7151 0.55 -0.5 17,400 + GFF7151 0.55 -2.5 17,400 + GFF7151 0.55 +0.0 17,400 + GFF7151 0.55 -0.3 17,400 + GFF7151 0.55 -1.2 17,400 + GFF7151 0.55 +1.1 17,400 + GFF7151 0.55 +0.3 17,400 + GFF7151 0.55 -0.3 17,401 - GFF7151 0.55 -0.8 17,401 - GFF7151 0.55 -1.0 17,401 - GFF7151 0.55 -0.3 17,401 - GFF7151 0.55 -0.5 17,401 - GFF7151 0.55 +1.5 17,401 - GFF7151 0.55 -2.2 17,475 + GFF7151 0.63 +0.9 17,475 + GFF7151 0.63 -0.7 17,475 + GFF7151 0.63 +0.3 17,475 + GFF7151 0.63 -0.0 17,475 + GFF7151 0.63 -0.1 17,475 + GFF7151 0.63 +0.0 17,475 + GFF7151 0.63 -0.5 17,475 + GFF7151 0.63 -0.9 17,475 + GFF7151 0.63 +0.2 17,475 + GFF7151 0.63 +0.2 17,475 + GFF7151 0.63 -0.6 17,475 + GFF7151 0.63 -0.2 17,475 + GFF7151 0.63 +0.3 17,475 + GFF7151 0.63 -1.3 17,475 + GFF7151 0.63 -0.1 17,476 - GFF7151 0.63 -0.8 17,476 - GFF7151 0.63 -1.9 17,476 - GFF7151 0.63 -0.4 17,476 - GFF7151 0.63 +0.0 17,476 - GFF7151 0.63 -0.3 17,476 - GFF7151 0.63 -0.1 17,476 - GFF7151 0.63 +2.2 17,535 + GFF7151 0.70 +0.0 17,535 + GFF7151 0.70 +0.1 17,535 + GFF7151 0.70 -2.0 17,535 + GFF7151 0.70 -0.4 17,535 + GFF7151 0.70 +0.5 17,535 + GFF7151 0.70 +1.2 17,536 - GFF7151 0.70 -0.7 17,536 - GFF7151 0.70 -0.5 17,536 - GFF7151 0.70 -1.1 17,536 - GFF7151 0.70 -0.1 17,536 - GFF7151 0.70 +0.2 17,853 + +1.3 17,860 - +0.4 17,869 - +0.6 17,869 - -0.4 17,870 + -1.4 17,870 + -0.3 17,881 + +0.2 17,957 + +0.5 17,957 + -0.4 17,957 + +0.3 17,957 + +0.1 17,957 + +0.3 17,957 + -1.4 17,957 + -0.8 17,957 + +1.1 17,957 + -3.3 17,958 - -0.6 17,958 - -0.9 17,958 - -0.4 17,958 - +0.8 17,958 - -0.3 17,958 - +0.7 17,958 - -0.2 17,958 - -0.8 17,958 - -0.2 17,958 - +0.1 18,057 + GFF7152 0.15 -0.1 18,060 - GFF7152 0.16 +0.2 18,080 + GFF7152 0.19 +0.1 18,080 + GFF7152 0.19 -0.7 18,080 + GFF7152 0.19 +0.9 18,080 + GFF7152 0.19 +0.2 18,080 + GFF7152 0.19 +1.1 18,080 + GFF7152 0.19 +0.8 18,080 + GFF7152 0.19 +0.5 18,081 - GFF7152 0.19 -1.8 18,081 - GFF7152 0.19 -0.6 18,783 + -0.2 18,783 + -0.2 18,783 + -0.1 18,784 - -2.1 18,784 - -0.7 18,784 - +1.5 19,014 + GFF7154 0.17 -1.7 19,014 + GFF7154 0.17 -0.2 19,014 + GFF7154 0.17 -1.5 19,014 + GFF7154 0.17 +0.1 19,014 + GFF7154 0.17 -0.6 19,014 + GFF7154 0.17 +1.2 19,014 + GFF7154 0.17 +0.9 19,014 + GFF7154 0.17 +1.2 19,014 + GFF7154 0.17 -2.2 19,014 + GFF7154 0.17 -0.0 19,014 + GFF7154 0.17 -0.7 19,014 + GFF7154 0.17 -0.3 19,015 - GFF7154 0.18 -0.1 19,015 - GFF7154 0.18 +0.6 19,015 - GFF7154 0.18 -0.2 19,015 - GFF7154 0.18 +0.5 19,015 - GFF7154 0.18 +0.2 19,015 - GFF7154 0.18 -1.3 19,015 - GFF7154 0.18 -2.4 19,015 - GFF7154 0.18 +0.4 19,015 - GFF7154 0.18 -0.9 19,015 - GFF7154 0.18 -0.4 19,015 - GFF7154 0.18 +0.5 19,015 - GFF7154 0.18 -0.6 19,015 - GFF7154 0.18 -0.0 19,015 - GFF7154 0.18 -1.7 19,015 - GFF7154 0.18 +0.4 19,015 - GFF7154 0.18 -0.3 19,015 - GFF7154 0.18 +0.9 19,092 + GFF7154 0.23 -0.3 19,092 + GFF7154 0.23 -1.3 19,093 - GFF7154 0.23 -0.7 19,093 - GFF7154 0.23 -0.3 19,093 - GFF7154 0.23 +0.3 19,116 + GFF7154 0.25 -0.2 19,116 + GFF7154 0.25 -0.6 19,116 + GFF7154 0.25 +0.7 19,116 + GFF7154 0.25 -1.1 19,116 + GFF7154 0.25 -1.9 19,116 + GFF7154 0.25 +0.1 19,117 - GFF7154 0.25 -0.0 19,117 - GFF7154 0.25 -0.4 19,117 - GFF7154 0.25 -0.2 19,117 - GFF7154 0.25 -0.8 19,117 - GFF7154 0.25 +0.9 19,117 - GFF7154 0.25 +0.6 19,117 - GFF7154 0.25 -0.9 19,117 - GFF7154 0.25 +1.1 19,117 - GFF7154 0.25 -1.1 19,117 - GFF7154 0.25 -0.0 19,118 + GFF7154 0.25 -0.3 19,119 - GFF7154 0.25 -0.3 19,119 - GFF7154 0.25 -0.3 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -1.9 19,134 + GFF7154 0.27 +0.9 19,134 + GFF7154 0.27 +0.5 19,134 + GFF7154 0.27 -1.4 19,134 + GFF7154 0.27 -0.3 19,134 + GFF7154 0.27 -0.5 19,134 + GFF7154 0.27 +0.9 19,134 + GFF7154 0.27 -1.4 19,134 + GFF7154 0.27 +0.2 19,135 - GFF7154 0.27 -2.4 19,135 - GFF7154 0.27 -0.1 19,305 + GFF7154 0.39 +0.3 19,305 + GFF7154 0.39 -0.5 19,305 + GFF7154 0.39 -0.3 19,305 + GFF7154 0.39 -0.4 19,305 + GFF7154 0.39 +1.2 19,305 + GFF7154 0.39 +0.4 19,305 + GFF7154 0.39 +0.2 19,305 + GFF7154 0.39 -0.0 19,305 + GFF7154 0.39 +1.5 19,306 - GFF7154 0.40 -1.1 19,306 - GFF7154 0.40 +1.2 19,306 - GFF7154 0.40 +0.3 19,306 - GFF7154 0.40 -0.7 19,306 - GFF7154 0.40 +0.1 19,306 - GFF7154 0.40 -1.4
Or see this region's nucleotide sequence