Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7072 and GFF7073 are separated by 836 nucleotides GFF7073 and GFF7074 are separated by 114 nucleotides GFF7074 and GFF7075 are separated by 363 nucleotides
GFF7072 - hypothetical protein, at 28,033 to 45,678
GFF7072
GFF7073 - no description, at 46,515 to 46,640
GFF7073
GFF7074 - no description, at 46,755 to 46,916
GFF7074
GFF7075 - no description, at 47,280 to 47,471
GFF7075
Position (kb) 46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.529 kb on + strand at 45.529 kb on + strand at 45.530 kb on - strand at 45.540 kb on - strand at 45.574 kb on + strand at 45.574 kb on + strand at 45.575 kb on - strand at 45.575 kb on - strand at 45.575 kb on - strand at 45.635 kb on + strand at 45.636 kb on - strand at 45.639 kb on + strand at 45.655 kb on - strand at 45.658 kb on - strand at 45.676 kb on + strand at 45.677 kb on - strand at 45.677 kb on - strand at 45.677 kb on - strand at 45.677 kb on - strand at 46.037 kb on + strand at 46.037 kb on + strand at 46.037 kb on + strand at 46.037 kb on + strand at 46.038 kb on - strand at 46.038 kb on - strand at 46.038 kb on - strand at 46.044 kb on + strand at 46.045 kb on - strand at 46.045 kb on - strand at 46.055 kb on - strand at 46.125 kb on - strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.172 kb on + strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.173 kb on - strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.176 kb on + strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.177 kb on - strand at 46.190 kb on + strand at 46.190 kb on + strand at 46.190 kb on + strand at 46.190 kb on + strand at 46.190 kb on + strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.191 kb on - strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.232 kb on + strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.233 kb on - strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.247 kb on + strand at 46.248 kb on - strand at 46.248 kb on - strand at 46.248 kb on - strand at 46.248 kb on - strand at 46.248 kb on - strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.251 kb on + strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.266 kb on + strand at 46.266 kb on + strand at 46.266 kb on + strand at 46.267 kb on - strand at 46.295 kb on + strand at 46.296 kb on - strand at 46.296 kb on - strand at 46.315 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.376 kb on + strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.377 kb on - strand at 46.394 kb on + strand at 46.394 kb on + strand at 46.394 kb on + strand at 46.394 kb on + strand at 46.394 kb on + strand at 46.394 kb on + strand at 46.395 kb on - strand at 46.395 kb on - strand at 46.395 kb on - strand at 46.422 kb on + strand at 46.422 kb on + strand at 46.423 kb on - strand at 46.425 kb on + strand at 46.425 kb on + strand at 46.426 kb on - strand at 46.426 kb on - strand at 46.444 kb on + strand at 46.445 kb on - strand at 46.445 kb on - strand at 46.445 kb on - strand at 46.445 kb on - strand at 46.473 kb on + strand at 46.473 kb on + strand at 46.473 kb on + strand at 46.474 kb on - strand at 46.474 kb on - strand at 46.516 kb on + strand at 46.517 kb on - strand at 46.546 kb on + strand, within GFF7073 at 46.547 kb on - strand, within GFF7073 at 46.584 kb on - strand, within GFF7073 at 46.625 kb on + strand, within GFF7073 at 46.626 kb on - strand, within GFF7073 at 46.655 kb on + strand at 46.656 kb on - strand at 46.665 kb on + strand at 46.669 kb on + strand at 46.669 kb on + strand at 46.834 kb on - strand, within GFF7074 at 46.949 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.950 kb on - strand at 46.958 kb on + strand at 46.959 kb on - strand at 46.959 kb on - strand at 46.990 kb on - strand at 46.990 kb on - strand at 46.990 kb on - strand at 46.992 kb on + strand at 46.992 kb on + strand at 46.993 kb on - strand at 47.037 kb on + strand at 47.072 kb on - strand at 47.072 kb on - strand at 47.072 kb on - strand at 47.085 kb on + strand at 47.085 kb on + strand at 47.085 kb on + strand at 47.086 kb on - strand at 47.100 kb on + strand at 47.100 kb on + strand at 47.100 kb on + strand at 47.100 kb on + strand at 47.101 kb on - strand at 47.126 kb on + strand at 47.126 kb on + strand at 47.127 kb on - strand at 47.127 kb on - strand at 47.127 kb on - strand at 47.127 kb on - strand at 47.209 kb on - strand at 47.209 kb on - strand at 47.250 kb on + strand at 47.251 kb on - strand at 47.264 kb on + strand at 47.265 kb on - strand at 47.265 kb on - strand at 47.265 kb on - strand at 47.276 kb on + strand at 47.276 kb on + strand at 47.277 kb on - strand at 47.277 kb on - strand at 47.277 kb on - strand at 47.277 kb on - strand at 47.279 kb on + strand at 47.280 kb on - strand at 47.280 kb on - strand at 47.280 kb on - strand at 47.325 kb on - strand, within GFF7075 at 47.330 kb on + strand, within GFF7075 at 47.331 kb on - strand, within GFF7075 at 47.331 kb on - strand, within GFF7075 at 47.335 kb on - strand, within GFF7075 at 47.360 kb on - strand, within GFF7075 at 47.360 kb on - strand, within GFF7075 at 47.388 kb on + strand, within GFF7075 at 47.392 kb on - strand, within GFF7075 at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.486 kb on + strand at 47.487 kb on - strand at 47.487 kb on - strand at 47.487 kb on - strand at 47.487 kb on - strand at 47.487 kb on - strand at 47.515 kb on + strand at 47.515 kb on + strand at 47.515 kb on + strand at 47.515 kb on + strand at 47.516 kb on - strand at 47.516 kb on - strand at 47.516 kb on - strand at 47.516 kb on - strand at 47.519 kb on + strand at 47.519 kb on + strand at 47.520 kb on - strand at 47.520 kb on - strand at 47.520 kb on - strand at 47.520 kb on - strand at 47.520 kb on - strand at 47.559 kb on + strand at 47.559 kb on + strand at 47.565 kb on + strand at 47.580 kb on + strand at 47.580 kb on + strand at 47.581 kb on - strand at 47.581 kb on - strand at 47.581 kb on - strand at 47.615 kb on + strand at 47.615 kb on + strand at 47.615 kb on + strand at 47.616 kb on - strand at 47.616 kb on - strand at 47.616 kb on - strand at 47.616 kb on - strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.619 kb on + strand at 47.620 kb on - strand at 47.620 kb on - strand at 47.620 kb on - strand at 47.620 kb on - strand at 47.620 kb on - strand at 47.620 kb on - strand at 47.631 kb on - strand at 47.631 kb on - strand at 47.631 kb on - strand at 47.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 45,529 + +0.7 45,529 + -0.1 45,530 - +0.6 45,540 - +0.4 45,574 + +2.0 45,574 + +1.0 45,575 - +0.1 45,575 - -2.0 45,575 - +1.6 45,635 + -0.3 45,636 - -0.0 45,639 + -0.5 45,655 - +0.1 45,658 - -0.4 45,676 + -0.3 45,677 - -1.9 45,677 - -0.6 45,677 - -1.3 45,677 - +0.7 46,037 + -0.6 46,037 + -0.2 46,037 + +0.5 46,037 + -1.2 46,038 - -0.4 46,038 - -0.8 46,038 - -1.1 46,044 + -1.0 46,045 - -2.5 46,045 - +0.6 46,055 - +0.4 46,125 - +1.0 46,172 + -0.1 46,172 + -0.2 46,172 + -0.8 46,172 + -0.5 46,172 + +0.2 46,172 + -0.2 46,172 + +1.6 46,172 + -0.4 46,172 + -0.6 46,172 + -0.3 46,172 + +0.5 46,172 + -0.0 46,172 + +0.2 46,172 + -0.1 46,172 + -0.7 46,172 + -0.1 46,172 + -1.2 46,172 + +0.6 46,172 + +0.2 46,173 - -0.0 46,173 - +0.3 46,173 - -0.0 46,173 - +0.2 46,173 - -0.4 46,173 - -0.1 46,173 - +0.7 46,176 + +0.3 46,176 + -0.2 46,176 + +0.6 46,176 + -1.0 46,176 + +0.6 46,176 + -1.9 46,176 + -0.2 46,176 + -0.2 46,177 - +0.5 46,177 - -0.7 46,177 - -0.2 46,177 - +0.0 46,177 - +0.1 46,177 - +0.7 46,177 - -0.7 46,177 - +0.5 46,190 + -1.0 46,190 + +2.2 46,190 + +0.1 46,190 + -0.6 46,190 + -0.7 46,191 - -0.3 46,191 - -0.4 46,191 - +0.2 46,191 - -0.5 46,191 - +0.0 46,191 - -0.4 46,191 - -0.2 46,191 - -0.4 46,191 - -0.4 46,232 + -0.6 46,232 + +0.2 46,232 + -0.1 46,232 + -1.1 46,232 + +0.6 46,232 + +0.4 46,232 + +0.6 46,232 + +1.2 46,232 + +0.7 46,232 + -0.5 46,232 + -0.1 46,232 + -0.2 46,232 + -0.0 46,232 + +0.3 46,232 + +0.8 46,232 + -0.6 46,232 + -0.2 46,232 + -0.5 46,232 + -0.3 46,232 + -0.9 46,232 + -0.8 46,232 + -0.8 46,232 + -0.4 46,232 + -0.4 46,233 - +1.2 46,233 - +0.7 46,233 - -1.0 46,233 - -1.6 46,233 - -0.1 46,233 - -0.0 46,233 - -0.1 46,233 - +0.0 46,233 - +0.4 46,233 - +0.2 46,233 - -0.8 46,233 - +0.2 46,233 - +0.3 46,233 - -0.1 46,233 - -1.6 46,233 - +0.1 46,233 - +0.5 46,233 - -0.6 46,233 - -0.0 46,233 - -0.8 46,233 - -0.9 46,247 + -0.0 46,247 + +0.9 46,247 + -0.2 46,247 + +0.4 46,247 + -0.0 46,247 + -0.3 46,247 + -0.2 46,247 + -0.2 46,248 - -0.1 46,248 - +0.1 46,248 - -0.1 46,248 - -0.5 46,248 - -0.3 46,251 + +0.7 46,251 + -1.0 46,251 + +0.9 46,251 + -0.9 46,251 + -0.2 46,251 + -0.4 46,251 + -0.8 46,251 + -1.1 46,251 + -0.4 46,251 + +0.6 46,251 + -2.7 46,251 + -0.6 46,251 + -0.4 46,251 + +0.3 46,251 + +0.3 46,252 - -0.2 46,252 - +0.1 46,252 - -0.1 46,252 - +0.2 46,252 - +0.3 46,252 - -0.4 46,252 - +1.3 46,252 - +0.4 46,252 - -0.3 46,252 - +2.9 46,252 - -1.0 46,252 - -1.1 46,266 + -0.0 46,266 + -1.6 46,266 + -1.2 46,267 - -1.7 46,295 + -1.0 46,296 - +0.8 46,296 - -0.1 46,315 + +0.9 46,376 + +1.2 46,376 + -0.5 46,376 + +0.1 46,376 + +1.1 46,376 + +0.4 46,376 + -0.1 46,376 + -0.7 46,376 + -1.4 46,377 - -0.6 46,377 - +0.6 46,377 - -0.0 46,377 - -1.2 46,377 - +0.3 46,377 - +0.5 46,377 - -0.5 46,377 - -0.0 46,377 - -0.1 46,377 - -0.0 46,377 - +0.2 46,377 - +0.4 46,377 - -0.1 46,377 - -0.3 46,394 + +0.9 46,394 + -1.2 46,394 + +0.7 46,394 + +1.1 46,394 + -0.9 46,394 + -0.1 46,395 - -0.8 46,395 - +0.3 46,395 - -0.8 46,422 + -0.6 46,422 + +1.6 46,423 - -1.6 46,425 + +1.6 46,425 + +1.1 46,426 - +0.6 46,426 - +0.0 46,444 + -2.8 46,445 - +0.3 46,445 - -2.2 46,445 - -0.2 46,445 - +0.6 46,473 + -1.4 46,473 + -0.7 46,473 + +0.2 46,474 - -1.0 46,474 - -0.6 46,516 + -0.3 46,517 - -1.2 46,546 + GFF7073 0.25 -1.2 46,547 - GFF7073 0.25 +0.0 46,584 - GFF7073 0.55 -1.4 46,625 + GFF7073 0.87 -0.2 46,626 - GFF7073 0.88 -0.2 46,655 + +0.1 46,656 - -0.3 46,665 + -0.4 46,669 + -0.9 46,669 + -0.3 46,834 - GFF7074 0.49 -0.3 46,949 + +0.4 46,949 + +0.3 46,949 + -0.4 46,949 + -0.4 46,950 - +0.7 46,958 + +0.3 46,959 - -1.3 46,959 - +0.7 46,990 - -0.3 46,990 - -0.1 46,990 - +0.2 46,992 + -1.6 46,992 + +0.1 46,993 - -0.4 47,037 + -1.7 47,072 - -0.7 47,072 - -0.5 47,072 - -0.5 47,085 + -2.3 47,085 + -0.2 47,085 + -1.0 47,086 - -0.4 47,100 + -0.5 47,100 + -1.5 47,100 + +0.2 47,100 + -0.6 47,101 - +0.6 47,126 + -0.4 47,126 + -1.0 47,127 - -1.2 47,127 - +0.2 47,127 - -1.8 47,127 - +0.4 47,209 - -1.0 47,209 - +0.7 47,250 + -0.3 47,251 - -1.1 47,264 + +0.1 47,265 - -0.3 47,265 - +1.1 47,265 - +0.2 47,276 + +0.2 47,276 + -0.1 47,277 - +0.8 47,277 - +1.1 47,277 - +0.4 47,277 - +0.3 47,279 + -0.2 47,280 - +0.4 47,280 - -0.7 47,280 - -0.7 47,325 - GFF7075 0.23 +2.2 47,330 + GFF7075 0.26 +0.5 47,331 - GFF7075 0.27 +1.1 47,331 - GFF7075 0.27 -0.2 47,335 - GFF7075 0.29 -0.2 47,360 - GFF7075 0.42 -0.7 47,360 - GFF7075 0.42 -0.5 47,388 + GFF7075 0.56 -1.7 47,392 - GFF7075 0.58 +1.0 47,486 + +0.3 47,486 + -0.1 47,486 + +0.5 47,486 + -0.2 47,486 + -0.2 47,486 + +0.3 47,486 + -0.2 47,486 + -0.0 47,486 + -0.6 47,487 - -0.1 47,487 - +0.3 47,487 - +1.0 47,487 - +0.2 47,487 - -0.3 47,515 + +0.8 47,515 + +0.1 47,515 + -1.0 47,515 + -0.2 47,516 - -0.5 47,516 - +0.1 47,516 - +0.4 47,516 - -0.8 47,519 + -0.3 47,519 + -0.4 47,520 - -0.5 47,520 - +0.2 47,520 - +1.2 47,520 - +1.6 47,520 - +2.2 47,559 + -0.8 47,559 + -0.3 47,565 + +0.2 47,580 + -0.1 47,580 + +0.8 47,581 - -1.7 47,581 - -1.7 47,581 - -0.1 47,615 + -0.4 47,615 + +0.2 47,615 + +0.7 47,616 - +1.6 47,616 - +0.8 47,616 - -1.7 47,616 - -0.3 47,619 + -0.7 47,619 + -1.7 47,619 + +0.1 47,619 + +0.3 47,619 + -0.6 47,619 + -1.4 47,619 + +0.6 47,619 + -0.3 47,619 + -0.8 47,619 + +0.8 47,620 - -0.6 47,620 - -0.6 47,620 - +0.2 47,620 - +0.8 47,620 - -0.3 47,620 - +0.3 47,631 - -0.5 47,631 - -0.8 47,631 - -0.4 47,631 - +0.2
Or see this region's nucleotide sequence