Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7040 and GFF7041 overlap by 4 nucleotides GFF7041 and GFF7042 are separated by 87 nucleotides GFF7042 and GFF7043 are separated by 9 nucleotides GFF7043 and GFF7044 are separated by 79 nucleotides
GFF7040 - FIG00361340: hypothetical protein, at 4,231 to 4,512
GFF7040
GFF7041 - hypothetical protein, at 4,509 to 4,658
GFF7041
GFF7042 - Acetyltransferase, GNAT family, at 4,746 to 5,264
GFF7042
GFF7043 - Putative transmembrane protein, at 5,274 to 5,957
GFF7043
GFF7044 - Inner membrane protein YedI, at 6,037 to 6,945
GFF7044
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.667 kb on - strand at 4.677 kb on + strand at 4.678 kb on - strand at 4.717 kb on + strand at 4.718 kb on - strand at 4.830 kb on + strand, within GFF7042 at 4.830 kb on + strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.912 kb on - strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.029 kb on - strand, within GFF7042 at 5.572 kb on - strand, within GFF7043 at 5.701 kb on - strand, within GFF7043 at 5.817 kb on - strand, within GFF7043 at 5.817 kb on - strand, within GFF7043 at 6.595 kb on + strand, within GFF7044 at 6.596 kb on - strand, within GFF7044 at 6.640 kb on + strand, within GFF7044 at 6.640 kb on + strand, within GFF7044 at 6.641 kb on - strand, within GFF7044
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 4,289 + GFF7040 0.21 +1.1 4,289 + GFF7040 0.21 +2.0 4,289 + GFF7040 0.21 -0.3 4,289 + GFF7040 0.21 -0.6 4,289 + GFF7040 0.21 -0.4 4,289 + GFF7040 0.21 -0.1 4,290 - GFF7040 0.21 -1.4 4,290 - GFF7040 0.21 -0.7 4,412 + GFF7040 0.64 +1.6 4,412 + GFF7040 0.64 -1.4 4,412 + GFF7040 0.64 -2.4 4,412 + GFF7040 0.64 -0.2 4,412 + GFF7040 0.64 +0.6 4,412 + GFF7040 0.64 -0.0 4,413 - GFF7040 0.65 +0.0 4,413 - GFF7040 0.65 +0.0 4,667 - -0.7 4,677 + -0.1 4,678 - -2.5 4,717 + +0.3 4,718 - +0.6 4,830 + GFF7042 0.16 -1.2 4,830 + GFF7042 0.16 +0.4 4,831 - GFF7042 0.16 -0.4 4,831 - GFF7042 0.16 -1.1 4,911 + GFF7042 0.32 -1.2 4,911 + GFF7042 0.32 +0.4 4,911 + GFF7042 0.32 -1.0 4,912 - GFF7042 0.32 -0.0 5,028 + GFF7042 0.54 -0.2 5,028 + GFF7042 0.54 +0.1 5,028 + GFF7042 0.54 -0.5 5,028 + GFF7042 0.54 +0.8 5,028 + GFF7042 0.54 -0.1 5,028 + GFF7042 0.54 -1.2 5,029 - GFF7042 0.55 -0.9 5,572 - GFF7043 0.44 -0.4 5,701 - GFF7043 0.62 -2.2 5,817 - GFF7043 0.79 -2.0 5,817 - GFF7043 0.79 -2.5 6,595 + GFF7044 0.61 -0.6 6,596 - GFF7044 0.61 -0.5 6,640 + GFF7044 0.66 -0.7 6,640 + GFF7044 0.66 +1.2 6,641 - GFF7044 0.66 -1.1
Or see this region's nucleotide sequence