Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7033 and GFF7034 overlap by 4 nucleotides GFF7034 and GFF7035 are separated by 143 nucleotides
GFF7033 - protein of unknown function DUF427, at 207 to 491
GFF7033
GFF7034 - FIG00538743: hypothetical protein, at 488 to 1,243
GFF7034
GFF7035 - UspA, at 1,387 to 1,827
GFF7035
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1 at 0.098 kb on - strand at 0.098 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.102 kb on - strand at 0.143 kb on - strand at 0.276 kb on + strand, within GFF7033 at 0.276 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.360 kb on + strand, within GFF7033 at 0.361 kb on - strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.363 kb on + strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.364 kb on - strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.408 kb on + strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.409 kb on - strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.411 kb on + strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.412 kb on - strand, within GFF7033 at 0.560 kb on + strand at 0.560 kb on + strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.561 kb on - strand at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.779 kb on + strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.780 kb on - strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.917 kb on + strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 0.918 kb on - strand, within GFF7034 at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.297 kb on + strand at 1.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 98 - -1.0 98 - +0.2 102 - +1.2 102 - -0.6 102 - -0.5 143 - -1.2 276 + GFF7033 0.24 -1.7 276 + GFF7033 0.24 +0.1 360 + GFF7033 0.54 -0.6 360 + GFF7033 0.54 +1.0 360 + GFF7033 0.54 -0.2 360 + GFF7033 0.54 +0.4 361 - GFF7033 0.54 -1.0 363 + GFF7033 0.55 +0.2 363 + GFF7033 0.55 -0.0 363 + GFF7033 0.55 +0.8 363 + GFF7033 0.55 +0.3 363 + GFF7033 0.55 -0.1 364 - GFF7033 0.55 +0.6 364 - GFF7033 0.55 +0.6 364 - GFF7033 0.55 -1.2 408 + GFF7033 0.71 +1.0 408 + GFF7033 0.71 +0.3 409 - GFF7033 0.71 -2.3 409 - GFF7033 0.71 -0.4 411 + GFF7033 0.72 -0.6 411 + GFF7033 0.72 +0.6 411 + GFF7033 0.72 +1.0 411 + GFF7033 0.72 +0.7 411 + GFF7033 0.72 +0.9 411 + GFF7033 0.72 +0.1 411 + GFF7033 0.72 -0.2 411 + GFF7033 0.72 -0.8 412 - GFF7033 0.72 +0.9 412 - GFF7033 0.72 -1.6 412 - GFF7033 0.72 +0.0 412 - GFF7033 0.72 +0.3 412 - GFF7033 0.72 -0.4 412 - GFF7033 0.72 +0.3 560 + -0.2 560 + -0.2 561 - -0.5 561 - +1.0 561 - -0.3 779 + GFF7034 0.38 +0.5 779 + GFF7034 0.38 +1.3 779 + GFF7034 0.38 +0.2 780 - GFF7034 0.39 +0.6 780 - GFF7034 0.39 -0.1 780 - GFF7034 0.39 -1.7 780 - GFF7034 0.39 -0.8 917 + GFF7034 0.57 -2.1 917 + GFF7034 0.57 -2.2 917 + GFF7034 0.57 +0.1 918 - GFF7034 0.57 -0.7 918 - GFF7034 0.57 -0.0 1,297 + -0.9 1,297 + -1.7 1,297 + -0.1 1,297 + -0.9 1,297 + -0.8 1,297 + -0.1 1,297 + -0.0 1,297 + +0.2 1,297 + +0.1 1,297 + -0.7 1,298 - +1.0
Or see this region's nucleotide sequence