Strain Fitness in Variovorax sp. SCN45 around GFF6887

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6886 and GFF6887 are separated by 122 nucleotidesGFF6887 and GFF6888 overlap by 4 nucleotides GFF6886 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 19,471 to 20,916 GFF6886 GFF6887 - Transporter, LysE family, at 21,039 to 21,638 GFF6887 GFF6888 - Permease of the drug/metabolite transporter (DMT) superfamily, at 21,635 to 22,618 GFF6888 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 20.084 kb on + strand, within GFF6886at 20.084 kb on + strand, within GFF6886at 20.084 kb on + strand, within GFF6886at 20.085 kb on - strand, within GFF6886at 20.147 kb on + strand, within GFF6886at 20.147 kb on + strand, within GFF6886at 20.148 kb on - strand, within GFF6886at 20.148 kb on - strand, within GFF6886at 20.148 kb on - strand, within GFF6886at 20.148 kb on - strand, within GFF6886at 20.423 kb on + strand, within GFF6886at 20.423 kb on + strand, within GFF6886at 20.423 kb on + strand, within GFF6886at 20.454 kb on + strand, within GFF6886at 20.454 kb on + strand, within GFF6886at 20.454 kb on + strand, within GFF6886at 20.454 kb on + strand, within GFF6886at 20.454 kb on + strand, within GFF6886at 20.455 kb on - strand, within GFF6886at 20.455 kb on - strand, within GFF6886at 20.455 kb on - strand, within GFF6886at 20.455 kb on - strand, within GFF6886at 20.702 kb on + strand, within GFF6886at 20.702 kb on + strand, within GFF6886at 20.702 kb on + strand, within GFF6886at 20.703 kb on - strand, within GFF6886at 20.756 kb on + strand, within GFF6886at 20.756 kb on + strand, within GFF6886at 20.757 kb on - strand, within GFF6886at 20.757 kb on - strand, within GFF6886at 20.757 kb on - strand, within GFF6886at 20.774 kb on + strandat 20.775 kb on - strandat 20.775 kb on - strandat 20.927 kb on - strandat 20.971 kb on + strandat 20.971 kb on + strandat 20.971 kb on + strandat 21.000 kb on + strandat 21.000 kb on + strandat 21.001 kb on - strandat 21.001 kb on - strandat 21.011 kb on + strandat 21.011 kb on + strandat 21.011 kb on + strandat 21.012 kb on - strandat 21.012 kb on - strandat 21.026 kb on + strandat 21.026 kb on + strandat 21.027 kb on - strandat 21.027 kb on - strandat 21.282 kb on + strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.283 kb on - strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.300 kb on + strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.301 kb on - strand, within GFF6887at 21.519 kb on + strand, within GFF6887at 21.519 kb on + strand, within GFF6887at 21.519 kb on + strand, within GFF6887at 21.520 kb on - strand, within GFF6887at 21.520 kb on - strand, within GFF6887at 21.520 kb on - strand, within GFF6887at 21.520 kb on - strand, within GFF6887at 21.520 kb on - strand, within GFF6887at 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.634 kb on + strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.635 kb on - strandat 21.917 kb on + strand, within GFF6888at 21.918 kb on - strand, within GFF6888at 21.918 kb on - strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.258 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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20,084 + GFF6886 0.42 +0.0
20,084 + GFF6886 0.42 +1.2
20,084 + GFF6886 0.42 -0.9
20,085 - GFF6886 0.42 +0.3
20,147 + GFF6886 0.47 +1.6
20,147 + GFF6886 0.47 +0.1
20,148 - GFF6886 0.47 -0.3
20,148 - GFF6886 0.47 -1.1
20,148 - GFF6886 0.47 -0.4
20,148 - GFF6886 0.47 -0.9
20,423 + GFF6886 0.66 -0.9
20,423 + GFF6886 0.66 -1.7
20,423 + GFF6886 0.66 +1.9
20,454 + GFF6886 0.68 +0.1
20,454 + GFF6886 0.68 +0.8
20,454 + GFF6886 0.68 +0.4
20,454 + GFF6886 0.68 -0.4
20,454 + GFF6886 0.68 +0.5
20,455 - GFF6886 0.68 +0.3
20,455 - GFF6886 0.68 -1.6
20,455 - GFF6886 0.68 -1.2
20,455 - GFF6886 0.68 +0.7
20,702 + GFF6886 0.85 +1.9
20,702 + GFF6886 0.85 +0.1
20,702 + GFF6886 0.85 -0.0
20,703 - GFF6886 0.85 +0.3
20,756 + GFF6886 0.89 +1.1
20,756 + GFF6886 0.89 -0.4
20,757 - GFF6886 0.89 +0.7
20,757 - GFF6886 0.89 +0.2
20,757 - GFF6886 0.89 -0.7
20,774 + -0.5
20,775 - -0.8
20,775 - -1.5
20,927 - +1.0
20,971 + -0.2
20,971 + -0.7
20,971 + +1.2
21,000 + +1.2
21,000 + -0.4
21,001 - +0.9
21,001 - +0.1
21,011 + +0.3
21,011 + -0.1
21,011 + +0.9
21,012 - -1.1
21,012 - -0.1
21,026 + -0.1
21,026 + +0.2
21,027 - -0.9
21,027 - -0.2
21,282 + GFF6887 0.41 -0.5
21,283 - GFF6887 0.41 -0.3
21,283 - GFF6887 0.41 +0.3
21,283 - GFF6887 0.41 -0.0
21,283 - GFF6887 0.41 -0.0
21,283 - GFF6887 0.41 -0.2
21,283 - GFF6887 0.41 -0.1
21,283 - GFF6887 0.41 +1.5
21,283 - GFF6887 0.41 -0.6
21,300 + GFF6887 0.43 +1.0
21,300 + GFF6887 0.43 -1.2
21,300 + GFF6887 0.43 +0.7
21,300 + GFF6887 0.43 -0.2
21,300 + GFF6887 0.43 +0.3
21,300 + GFF6887 0.43 +1.2
21,300 + GFF6887 0.43 +0.7
21,300 + GFF6887 0.43 -1.5
21,300 + GFF6887 0.43 -0.7
21,300 + GFF6887 0.43 +0.1
21,300 + GFF6887 0.43 -0.3
21,300 + GFF6887 0.43 -0.9
21,300 + GFF6887 0.43 +0.1
21,300 + GFF6887 0.43 -0.5
21,301 - GFF6887 0.44 -0.1
21,301 - GFF6887 0.44 +0.4
21,301 - GFF6887 0.44 +1.6
21,301 - GFF6887 0.44 +1.0
21,301 - GFF6887 0.44 +0.6
21,301 - GFF6887 0.44 -0.4
21,301 - GFF6887 0.44 +0.2
21,301 - GFF6887 0.44 -0.2
21,301 - GFF6887 0.44 -0.5
21,301 - GFF6887 0.44 +1.1
21,301 - GFF6887 0.44 +0.4
21,301 - GFF6887 0.44 +0.2
21,301 - GFF6887 0.44 +0.9
21,519 + GFF6887 0.80 -0.2
21,519 + GFF6887 0.80 -0.1
21,519 + GFF6887 0.80 -0.7
21,520 - GFF6887 0.80 -0.4
21,520 - GFF6887 0.80 -1.1
21,520 - GFF6887 0.80 +0.2
21,520 - GFF6887 0.80 +0.7
21,520 - GFF6887 0.80 +1.9
21,634 + +0.2
21,634 + -0.3
21,634 + +1.2
21,634 + +0.1
21,634 + -0.1
21,634 + -0.5
21,634 + +2.2
21,634 + -0.6
21,634 + -0.4
21,634 + -0.3
21,634 + -0.2
21,634 + -1.1
21,634 + -0.3
21,634 + -0.4
21,635 - -0.2
21,635 - +0.5
21,635 - +0.3
21,635 - +0.6
21,635 - -0.7
21,635 - +0.5
21,635 - -0.4
21,635 - -0.5
21,635 - -0.1
21,635 - +1.5
21,917 + GFF6888 0.29 +0.3
21,918 - GFF6888 0.29 +1.6
21,918 - GFF6888 0.29 -0.4
22,166 + GFF6888 0.54 -1.4
22,166 + GFF6888 0.54 -1.3
22,166 + GFF6888 0.54 -0.0
22,166 + GFF6888 0.54 -2.6
22,167 - GFF6888 0.54 -0.2
22,167 - GFF6888 0.54 -1.2
22,167 - GFF6888 0.54 -0.0
22,167 - GFF6888 0.54 -1.7
22,167 - GFF6888 0.54 -1.8
22,167 - GFF6888 0.54 -0.6
22,172 + GFF6888 0.55 +0.9
22,172 + GFF6888 0.55 -0.2
22,172 + GFF6888 0.55 -1.3
22,172 + GFF6888 0.55 +0.3
22,172 + GFF6888 0.55 -0.4
22,172 + GFF6888 0.55 +0.4
22,172 + GFF6888 0.55 -0.6
22,172 + GFF6888 0.55 +0.9
22,172 + GFF6888 0.55 +0.3
22,173 - GFF6888 0.55 -0.6
22,173 - GFF6888 0.55 +0.0
22,173 - GFF6888 0.55 +0.1
22,173 - GFF6888 0.55 -0.1
22,173 - GFF6888 0.55 -0.4
22,173 - GFF6888 0.55 +1.1
22,173 - GFF6888 0.55 -0.4
22,173 - GFF6888 0.55 +0.1
22,258 + GFF6888 0.63 +0.0
22,316 + GFF6888 0.69 +0.9
22,316 + GFF6888 0.69 +0.7
22,316 + GFF6888 0.69 +0.7
22,316 + GFF6888 0.69 -0.3
22,316 + GFF6888 0.69 -0.3
22,317 - GFF6888 0.69 -0.1
22,317 - GFF6888 0.69 -0.6
22,317 - GFF6888 0.69 -0.4
22,317 - GFF6888 0.69 -0.2
22,317 - GFF6888 0.69 -0.1

Or see this region's nucleotide sequence