Strain Fitness in Variovorax sp. SCN45 around GFF6870

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
965	-		GFF6868	0.28	-0.3
975	+		GFF6868	0.30	-2.2
976	-		GFF6868	0.30	-0.1
976	-		GFF6868	0.30	-0.7
976	-		GFF6868	0.30	-0.1
976	-		GFF6868	0.30	-2.3
1,194	+		GFF6868	0.59	-2.0
1,195	-		GFF6868	0.59	+0.5
1,195	-		GFF6868	0.59	-0.6
1,317	+		GFF6868	0.75	+0.5
1,318	-		GFF6868	0.75	+1.3
1,318	-		GFF6868	0.75	+0.0
1,318	-		GFF6868	0.75	+1.9
1,318	-		GFF6868	0.75	-0.5
1,318	-		GFF6868	0.75	+0.2
1,413	+		GFF6868	0.88	+0.5
1,413	+		GFF6868	0.88	-1.1
1,413	+		GFF6868	0.88	-1.4
1,413	+		GFF6868	0.88	-0.1
1,413	+		GFF6868	0.88	-0.3
1,413	-		GFF6868	0.88	-0.1
1,414	-		GFF6868	0.88	+2.6
1,414	-		GFF6868	0.88	-0.4
1,414	-		GFF6868	0.88	-0.1
1,414	-		GFF6868	0.88	-0.1
1,414	-		GFF6868	0.88	+0.9
1,443	+				-0.1
1,443	+				-0.1
1,443	+				-0.1
1,443	+				-2.5
1,443	+				+1.3
1,449	+				+0.9
1,449	+				-0.3
1,450	-				-0.6
1,485	+				-0.7
1,485	+				-1.6
1,485	+				-0.7
1,486	-				-0.1
1,539	+				-1.1
1,539	+				-1.6
1,539	+				-0.3
1,539	+				-1.3
1,539	+				-0.8
1,539	+				-0.3
1,539	+				-1.6
1,539	+				+0.3
1,539	+				-1.7
1,539	+				-1.8
1,539	+				-0.4
1,540	-				+0.3
1,540	-				-1.0
1,540	-				-0.6
1,540	-				-0.4
1,540	-				+0.6
1,540	-				-0.3
1,540	-				+0.3
1,540	-				+1.9
1,540	-				+0.3
1,540	-				+0.2
1,540	-				+0.5
1,585	+		GFF6869	0.19	-3.4
1,607	+		GFF6869	0.24	-0.9
1,608	-		GFF6869	0.24	-1.9
1,608	-		GFF6869	0.24	-1.7
1,608	-		GFF6869	0.24	+0.9
1,608	-		GFF6869	0.24	+1.9
1,608	-		GFF6869	0.24	+2.5
1,610	+		GFF6869	0.25	-2.2
1,610	+		GFF6869	0.25	-1.7
1,610	+		GFF6869	0.25	+0.5
1,610	+		GFF6869	0.25	-0.6
1,610	+		GFF6869	0.25	-0.6
1,707	+		GFF6869	0.45	-1.0
1,708	-		GFF6869	0.45	-1.7
1,717	-		GFF6869	0.47	-3.2
1,840	+		GFF6869	0.73	-0.1
1,840	+		GFF6869	0.73	-0.4
1,840	+		GFF6869	0.73	-0.7
1,841	-		GFF6869	0.74	-0.4
1,841	-		GFF6869	0.74	+0.7
1,841	-		GFF6869	0.74	-1.6
1,841	-		GFF6869	0.74	-2.4
1,841	-		GFF6869	0.74	-2.4
2,013	+				-1.0
2,013	+				-2.2
2,013	+				-0.9
2,013	+				-0.7
2,013	+				-1.4
2,013	+				-0.6
2,013	+				+0.7
2,014	-				-1.9
2,014	-				-1.5
2,014	-				-2.1
2,014	-				-1.6
2,022	+				-0.9
2,022	+				-0.7
2,022	+				-1.3
2,022	+				-1.9
2,023	-				-1.6
2,023	-				-0.9
2,023	-				+0.3
2,023	-				-1.2
2,023	-				-1.2
2,023	-				-0.6
2,056	-				-0.9
2,145	+		GFF6870	0.19	-1.2
2,145	+		GFF6870	0.19	-0.5
2,145	+		GFF6870	0.19	+0.0
2,146	-		GFF6870	0.19	-0.2
2,146	-		GFF6870	0.19	-0.7
2,146	-		GFF6870	0.19	-0.8
2,163	+		GFF6870	0.21	-0.9
2,163	+		GFF6870	0.21	-3.0
2,163	+		GFF6870	0.21	-1.0
2,163	+		GFF6870	0.21	-1.5
2,164	-		GFF6870	0.21	-0.4
2,164	-		GFF6870	0.21	-2.0
2,164	-		GFF6870	0.21	-1.9
2,234	+		GFF6870	0.28	-0.9
2,234	+		GFF6870	0.28	-2.8
2,234	+		GFF6870	0.28	-0.5
2,235	-		GFF6870	0.28	-2.2
2,235	-		GFF6870	0.28	+0.1
2,235	-		GFF6870	0.28	-1.7
2,235	-		GFF6870	0.28	-1.5
2,355	+		GFF6870	0.41	-2.3
2,355	+		GFF6870	0.41	-2.3
2,355	+		GFF6870	0.41	-1.9
2,355	+		GFF6870	0.41	-0.1
2,356	-		GFF6870	0.41	-0.6
2,356	-		GFF6870	0.41	-0.1
2,356	-		GFF6870	0.41	-0.3
2,356	-		GFF6870	0.41	-0.7
2,356	-		GFF6870	0.41	+0.3
2,356	-		GFF6870	0.41	+0.9
2,385	+		GFF6870	0.44	-1.6
2,386	-		GFF6870	0.44	-1.6
2,386	-		GFF6870	0.44	-0.1
2,386	-		GFF6870	0.44	-1.9
2,386	-		GFF6870	0.44	-0.4
2,386	-		GFF6870	0.44	-0.7
2,386	-		GFF6870	0.44	-0.9
2,412	+		GFF6870	0.47	-0.9
2,412	+		GFF6870	0.47	-0.6
2,412	+		GFF6870	0.47	+0.3
2,412	+		GFF6870	0.47	+4.2
2,412	+		GFF6870	0.47	+0.2
2,412	+		GFF6870	0.47	-0.1
2,413	-		GFF6870	0.47	-1.6
2,413	-		GFF6870	0.47	-0.4
2,413	-		GFF6870	0.47	-2.8
2,413	-		GFF6870	0.47	-1.3
2,413	-		GFF6870	0.47	-0.9
2,413	-		GFF6870	0.47	-0.6
2,413	-		GFF6870	0.47	+0.9
2,413	-		GFF6870	0.47	-1.6
2,413	-		GFF6870	0.47	-2.6
2,612	-		GFF6870	0.68	+1.9
2,612	-		GFF6870	0.68	-1.6
2,645	+		GFF6870	0.71	-0.1
2,645	+		GFF6870	0.71	-0.7
2,645	+		GFF6870	0.71	-1.8
2,645	+		GFF6870	0.71	-2.3
2,646	-		GFF6870	0.71	-0.3
2,799	+		GFF6870	0.87	-0.9
2,799	+		GFF6870	0.87	-0.3
2,799	+		GFF6870	0.87	+0.5
2,799	+		GFF6870	0.87	-0.2
2,799	+		GFF6870	0.87	-0.4
2,799	+		GFF6870	0.87	-1.1
2,799	+		GFF6870	0.87	-1.3
2,799	+		GFF6870	0.87	-0.3
2,799	+		GFF6870	0.87	+0.9
2,800	-		GFF6870	0.87	-1.1
2,800	-		GFF6870	0.87	+0.6
2,800	-		GFF6870	0.87	-0.3
2,800	-		GFF6870	0.87	-1.5
2,928	+				-0.7
2,928	+				+0.0
2,928	+				+0.1
2,928	+				+0.2
2,928	+				-1.6
2,929	-				+2.1
2,929	-				-0.2
2,991	+				-0.7
2,991	+				-0.3
2,991	+				-0.7
2,991	+				-0.1
2,992	-				-1.6
2,992	-				-0.9
2,992	-				-1.3
2,992	-				+0.2
2,992	-				-0.8
2,992	-				+0.6
3,000	+				+0.1
3,000	+				-1.4
3,000	+				-0.4
3,000	+				-0.1
3,000	+				-0.7
3,000	+				-0.6
3,000	+				+1.2
3,000	+				-2.0
3,000	+				+1.9
3,000	+				-1.1
3,000	+				-2.2
3,000	+				-1.4
3,000	+				-0.7
3,000	+				-0.6
3,000	+				-0.3
3,000	+				-0.3
3,000	+				-1.6
3,000	+				-1.6
3,000	+				+0.9
3,000	+				-2.4
3,000	+				-1.4
3,000	+				-0.2
3,001	-				-2.3
3,001	-				-2.6
3,001	-				-1.0
3,001	-				-1.4
3,001	-				-0.7
3,001	-				+2.3
3,001	-				-0.6
3,001	-				-1.6
3,001	-				-0.7
3,001	-				-0.1
3,001	-				-2.4
3,001	-				-0.9
3,001	-				-1.1
3,001	-				-1.2
3,001	-				+1.5
3,033	+		GFF6871	0.11	-1.3
3,034	-		GFF6871	0.11	+0.4
3,123	+		GFF6871	0.20	+0.6
3,123	+		GFF6871	0.20	+0.6
3,123	+		GFF6871	0.20	-0.2
3,124	-		GFF6871	0.20	-2.1
3,124	-		GFF6871	0.20	-0.4
3,124	-		GFF6871	0.20	-0.7
3,130	-		GFF6871	0.21	+0.6
3,172	+		GFF6871	0.25	+0.2
3,172	+		GFF6871	0.25	-2.1
3,173	-		GFF6871	0.26	-1.4
3,174	+		GFF6871	0.26	-3.0
3,174	+		GFF6871	0.26	-0.7
3,175	-		GFF6871	0.26	+0.9
3,175	-		GFF6871	0.26	-0.9
3,175	-		GFF6871	0.26	-1.5
3,175	-		GFF6871	0.26	-1.7
3,180	+		GFF6871	0.26	-1.4
3,198	+		GFF6871	0.28	-0.9
3,198	+		GFF6871	0.28	-0.6
3,198	+		GFF6871	0.28	+0.0
3,198	+		GFF6871	0.28	+1.3
3,198	+		GFF6871	0.28	-0.6
3,198	+		GFF6871	0.28	-0.4
3,199	-		GFF6871	0.28	+0.1
3,199	-		GFF6871	0.28	+0.3
3,327	+		GFF6871	0.42	-1.3
3,328	-		GFF6871	0.42	-4.0
3,328	-		GFF6871	0.42	-1.7
3,328	-		GFF6871	0.42	-0.4
3,328	-		GFF6871	0.42	-2.6
3,328	-		GFF6871	0.42	+0.3
3,328	-		GFF6871	0.42	-2.1
3,378	+		GFF6871	0.47	-0.9
3,378	+		GFF6871	0.47	-0.4
3,378	+		GFF6871	0.47	-1.0
3,378	+		GFF6871	0.47	-0.1
3,378	+		GFF6871	0.47	-2.0
3,379	-		GFF6871	0.47	-0.7
3,379	-		GFF6871	0.47	-1.0
3,379	-		GFF6871	0.47	+0.3
3,379	-		GFF6871	0.47	-1.5
3,379	-		GFF6871	0.47	-0.4
3,379	-		GFF6871	0.47	-1.4
3,379	-		GFF6871	0.47	-1.8
3,379	-		GFF6871	0.47	-1.9
3,387	+		GFF6871	0.48	-1.5
3,387	+		GFF6871	0.48	-2.4
3,387	+		GFF6871	0.48	-2.2
3,388	-		GFF6871	0.48	-0.1
3,388	-		GFF6871	0.48	+0.2
3,388	-		GFF6871	0.48	-0.4
3,388	-		GFF6871	0.48	-1.2
3,450	+		GFF6871	0.54	-1.4
3,451	-		GFF6871	0.54	+1.1
3,564	+		GFF6871	0.66	-0.8
3,564	+		GFF6871	0.66	+0.1
3,564	+		GFF6871	0.66	+0.5
3,564	+		GFF6871	0.66	-0.8
3,564	+		GFF6871	0.66	+0.2
3,564	+		GFF6871	0.66	+0.2
3,564	+		GFF6871	0.66	-1.5
3,564	+		GFF6871	0.66	-0.7
3,564	+		GFF6871	0.66	-0.7
3,565	-		GFF6871	0.66	-0.7
3,565	-		GFF6871	0.66	-0.7
3,565	-		GFF6871	0.66	-2.2
3,565	-		GFF6871	0.66	-0.8
3,567	+		GFF6871	0.66	-1.0
3,567	+		GFF6871	0.66	-2.2
3,568	-		GFF6871	0.67	-0.5
3,568	-		GFF6871	0.67	-0.8
3,568	-		GFF6871	0.67	-2.4
3,568	-		GFF6871	0.67	+0.0
3,609	+		GFF6871	0.71	-0.6
3,610	-		GFF6871	0.71	+0.2
3,610	-		GFF6871	0.71	-1.1
3,610	-		GFF6871	0.71	-1.8
3,610	-		GFF6871	0.71	-1.9
3,610	-		GFF6871	0.71	-2.6
3,613	+		GFF6871	0.71	-1.9
3,670	+		GFF6871	0.77	-1.4
3,670	+		GFF6871	0.77	-1.1
3,671	-		GFF6871	0.77	-1.7
3,671	-		GFF6871	0.77	-0.4
3,671	-		GFF6871	0.77	-0.2
3,671	-		GFF6871	0.77	+0.4
3,720	+		GFF6871	0.82	-1.7
3,720	+		GFF6871	0.82	-1.4
3,721	-		GFF6871	0.82	-0.5
3,729	+		GFF6871	0.83	-0.9
3,729	+		GFF6871	0.83	-1.1
3,729	+		GFF6871	0.83	-0.3
3,729	+		GFF6871	0.83	-1.7
3,729	+		GFF6871	0.83	-2.0
3,729	+		GFF6871	0.83	+0.7
3,729	+		GFF6871	0.83	+0.5
3,729	+		GFF6871	0.83	-2.4
3,729	+		GFF6871	0.83	-1.8
3,730	-		GFF6871	0.83	-0.9
3,730	-		GFF6871	0.83	-0.5
3,730	-		GFF6871	0.83	-0.7
3,730	-		GFF6871	0.83	-2.0
3,730	-		GFF6871	0.83	-2.8
3,730	-		GFF6871	0.83	-2.5
3,768	+		GFF6871	0.87	-1.6
3,769	-		GFF6871	0.87	-1.3