Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6788 and GFF6789 are separated by 1 nucleotides GFF6789 and GFF6790 are separated by 77 nucleotides GFF6790 and GFF6791 are separated by 40 nucleotides GFF6791 and GFF6792 overlap by 4 nucleotides
GFF6788 - Multicopper oxidase, at 36,691 to 38,082
GFF6788
GFF6789 - Copper tolerance protein, at 38,084 to 39,556
GFF6789
GFF6790 - no description, at 39,634 to 40,065
GFF6790
GFF6791 - FIG00538730: hypothetical protein, at 40,106 to 40,393
GFF6791
GFF6792 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 40,390 to 41,394
GFF6792
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.620 kb on - strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 38.289 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.971 kb on - strand, within GFF6789 at 39.147 kb on - strand, within GFF6789 at 39.215 kb on + strand, within GFF6789 at 39.216 kb on - strand, within GFF6789 at 39.576 kb on + strand at 39.576 kb on + strand at 39.576 kb on + strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.620 kb on + strand at 39.621 kb on - strand at 39.621 kb on - strand at 39.621 kb on - strand at 40.078 kb on + strand at 40.078 kb on + strand at 40.079 kb on - strand at 40.079 kb on - strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 37,583 + GFF6788 0.64 -0.1 37,583 + GFF6788 0.64 -0.2 37,583 + GFF6788 0.64 -0.0 37,583 + GFF6788 0.64 -0.4 37,583 + GFF6788 0.64 -0.1 37,583 + GFF6788 0.64 +0.7 37,583 + GFF6788 0.64 +0.1 37,583 + GFF6788 0.64 +0.9 37,583 + GFF6788 0.64 +2.0 37,583 + GFF6788 0.64 -0.6 37,584 - GFF6788 0.64 +0.8 37,584 - GFF6788 0.64 +0.8 37,584 - GFF6788 0.64 -0.2 37,584 - GFF6788 0.64 +1.6 37,584 - GFF6788 0.64 -1.2 37,584 - GFF6788 0.64 +0.6 37,584 - GFF6788 0.64 -0.2 37,620 - GFF6788 0.67 -0.1 37,802 + GFF6788 0.80 -0.8 37,802 + GFF6788 0.80 +0.8 37,802 + GFF6788 0.80 +1.0 37,803 - GFF6788 0.80 -0.2 37,803 - GFF6788 0.80 -1.0 37,803 - GFF6788 0.80 -1.9 37,803 - GFF6788 0.80 +1.0 37,934 + GFF6788 0.89 -0.0 37,934 + GFF6788 0.89 -1.2 37,934 + GFF6788 0.89 -0.7 37,934 + GFF6788 0.89 +0.8 37,934 + GFF6788 0.89 +1.6 37,934 + GFF6788 0.89 +0.4 37,934 + GFF6788 0.89 +0.6 37,935 - GFF6788 0.89 -0.7 37,935 - GFF6788 0.89 -0.1 37,935 - GFF6788 0.89 +0.8 37,935 - GFF6788 0.89 +0.6 38,289 + GFF6789 0.14 +1.6 38,364 + GFF6789 0.19 +0.2 38,364 + GFF6789 0.19 +0.6 38,364 + GFF6789 0.19 -2.2 38,364 + GFF6789 0.19 -0.4 38,365 - GFF6789 0.19 +0.7 38,365 - GFF6789 0.19 +0.7 38,365 - GFF6789 0.19 +0.1 38,452 - GFF6789 0.25 -1.1 38,452 - GFF6789 0.25 +2.3 38,452 - GFF6789 0.25 -0.8 38,760 + GFF6789 0.46 -0.9 38,760 + GFF6789 0.46 -0.4 38,761 - GFF6789 0.46 -0.8 38,761 - GFF6789 0.46 -1.6 38,971 - GFF6789 0.60 -0.8 39,147 - GFF6789 0.72 -0.5 39,215 + GFF6789 0.77 +0.3 39,216 - GFF6789 0.77 -0.2 39,576 + +1.1 39,576 + -0.4 39,576 + +0.2 39,577 - +0.1 39,577 - -0.4 39,577 - -1.0 39,577 - -0.1 39,577 - -0.1 39,620 + -0.4 39,621 - -0.7 39,621 - -0.3 39,621 - +1.8 40,078 + -0.1 40,078 + -0.4 40,079 - +0.2 40,079 - +0.1 40,107 + -1.0 40,107 + +0.4 40,107 + -0.0 40,107 + -0.6 40,108 - -1.6 40,108 - -1.2 40,108 - +1.0 40,108 - +0.1 40,108 - -1.0 40,108 - -0.3 40,108 - -0.8
Or see this region's nucleotide sequence