Strain Fitness in Variovorax sp. SCN45 around GFF6501

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6499 and GFF6500 are separated by 122 nucleotidesGFF6500 and GFF6501 are separated by 52 nucleotidesGFF6501 and GFF6502 are separated by 32 nucleotides GFF6499 - hypothetical protein, at 76,369 to 76,848 GFF6499 GFF6500 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 76,971 to 77,657 GFF6500 GFF6501 - Uncharacterized MFS-type transporter, at 77,710 to 79,119 GFF6501 GFF6502 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 79,152 to 80,150 GFF6502 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 76.748 kb on + strand, within GFF6499at 76.749 kb on - strand, within GFF6499at 76.767 kb on - strand, within GFF6499at 76.832 kb on - strandat 76.956 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.967 kb on + strandat 76.968 kb on - strandat 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.113 kb on + strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.114 kb on - strand, within GFF6500at 77.254 kb on + strand, within GFF6500at 77.254 kb on + strand, within GFF6500at 77.255 kb on - strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.347 kb on + strand, within GFF6500at 77.450 kb on - strand, within GFF6500at 77.450 kb on - strand, within GFF6500at 77.768 kb on + strandat 77.769 kb on - strandat 77.769 kb on - strandat 77.769 kb on - strandat 78.056 kb on + strand, within GFF6501at 78.066 kb on - strand, within GFF6501at 78.131 kb on + strand, within GFF6501at 78.131 kb on + strand, within GFF6501at 78.132 kb on - strand, within GFF6501at 78.132 kb on - strand, within GFF6501at 78.137 kb on + strand, within GFF6501at 78.137 kb on + strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.138 kb on - strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.317 kb on + strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.915 kb on - strand, within GFF6501at 78.926 kb on + strand, within GFF6501at 78.927 kb on - strand, within GFF6501at 79.013 kb on + strandat 79.013 kb on + strandat 79.013 kb on + strandat 79.029 kb on - strandat 79.029 kb on - strandat 79.029 kb on - strandat 79.201 kb on + strandat 79.201 kb on + strandat 79.202 kb on - strandat 79.202 kb on - strandat 79.202 kb on - strandat 79.210 kb on + strandat 79.210 kb on + strandat 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.268 kb on - strand, within GFF6502at 79.268 kb on - strand, within GFF6502at 79.271 kb on + strand, within GFF6502at 79.271 kb on + strand, within GFF6502at 79.272 kb on - strand, within GFF6502at 79.272 kb on - strand, within GFF6502at 79.280 kb on - strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.379 kb on - strand, within GFF6502at 79.379 kb on - strand, within GFF6502at 79.665 kb on - strand, within GFF6502at 79.768 kb on + strand, within GFF6502at 79.768 kb on + strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 80.032 kb on + strand, within GFF6502at 80.033 kb on - strand, within GFF6502at 80.073 kb on - strandat 80.073 kb on - strandat 80.089 kb on - strandat 80.089 kb on - strandat 80.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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76,748 + GFF6499 0.79 -0.5
76,749 - GFF6499 0.79 +1.4
76,767 - GFF6499 0.83 -0.3
76,832 - -0.8
76,956 + -2.3
76,967 + -1.3
76,967 + -0.4
76,967 + +0.1
76,967 + +0.0
76,968 - +0.1
77,113 + GFF6500 0.21 -1.2
77,113 + GFF6500 0.21 +0.3
77,113 + GFF6500 0.21 -0.1
77,113 + GFF6500 0.21 -0.6
77,114 - GFF6500 0.21 -0.0
77,114 - GFF6500 0.21 -0.1
77,114 - GFF6500 0.21 -1.0
77,114 - GFF6500 0.21 -1.3
77,114 - GFF6500 0.21 -0.2
77,114 - GFF6500 0.21 -1.4
77,114 - GFF6500 0.21 -0.1
77,114 - GFF6500 0.21 +0.0
77,254 + GFF6500 0.41 +0.4
77,254 + GFF6500 0.41 -0.1
77,255 - GFF6500 0.41 -0.2
77,347 + GFF6500 0.55 -0.9
77,347 + GFF6500 0.55 -0.3
77,347 + GFF6500 0.55 -0.6
77,347 + GFF6500 0.55 -0.3
77,450 - GFF6500 0.70 -1.9
77,450 - GFF6500 0.70 -0.1
77,768 + -0.6
77,769 - +0.6
77,769 - -0.2
77,769 - +0.6
78,056 + GFF6501 0.25 -2.0
78,066 - GFF6501 0.25 -0.7
78,131 + GFF6501 0.30 -0.4
78,131 + GFF6501 0.30 +0.5
78,132 - GFF6501 0.30 -1.0
78,132 - GFF6501 0.30 -0.6
78,137 + GFF6501 0.30 -1.7
78,137 + GFF6501 0.30 +0.8
78,138 - GFF6501 0.30 -0.0
78,138 - GFF6501 0.30 +0.6
78,138 - GFF6501 0.30 -0.1
78,272 + GFF6501 0.40 +0.9
78,272 + GFF6501 0.40 -0.8
78,272 + GFF6501 0.40 -0.0
78,273 - GFF6501 0.40 +0.4
78,273 - GFF6501 0.40 +0.1
78,273 - GFF6501 0.40 -0.9
78,273 - GFF6501 0.40 -1.1
78,273 - GFF6501 0.40 +0.8
78,273 - GFF6501 0.40 -1.2
78,273 - GFF6501 0.40 +0.6
78,273 - GFF6501 0.40 -0.3
78,317 + GFF6501 0.43 -2.1
78,318 - GFF6501 0.43 -0.2
78,318 - GFF6501 0.43 +0.3
78,497 + GFF6501 0.56 -0.4
78,497 + GFF6501 0.56 -1.7
78,498 - GFF6501 0.56 -0.6
78,498 - GFF6501 0.56 +0.0
78,498 - GFF6501 0.56 -0.7
78,498 - GFF6501 0.56 -0.4
78,575 + GFF6501 0.61 +0.9
78,575 + GFF6501 0.61 -1.0
78,575 + GFF6501 0.61 -1.4
78,575 + GFF6501 0.61 -0.8
78,575 + GFF6501 0.61 -1.2
78,575 + GFF6501 0.61 +0.2
78,575 + GFF6501 0.61 -0.3
78,575 + GFF6501 0.61 -1.7
78,575 + GFF6501 0.61 +0.3
78,575 + GFF6501 0.61 +0.6
78,575 + GFF6501 0.61 -0.3
78,575 + GFF6501 0.61 +1.6
78,575 + GFF6501 0.61 -0.4
78,576 - GFF6501 0.61 -0.4
78,576 - GFF6501 0.61 -1.3
78,576 - GFF6501 0.61 -1.5
78,576 - GFF6501 0.61 -0.0
78,576 - GFF6501 0.61 -0.4
78,576 - GFF6501 0.61 -1.4
78,576 - GFF6501 0.61 -0.6
78,785 + GFF6501 0.76 +1.0
78,785 + GFF6501 0.76 +0.8
78,785 + GFF6501 0.76 -1.0
78,786 - GFF6501 0.76 -2.6
78,786 - GFF6501 0.76 -0.3
78,786 - GFF6501 0.76 -0.5
78,786 - GFF6501 0.76 +0.4
78,786 - GFF6501 0.76 -1.1
78,915 - GFF6501 0.85 +0.2
78,926 + GFF6501 0.86 -0.7
78,927 - GFF6501 0.86 -0.7
79,013 + +0.6
79,013 + -0.2
79,013 + -1.0
79,029 - +0.5
79,029 - -0.9
79,029 - -1.9
79,201 + -2.7
79,201 + -0.6
79,202 - +0.1
79,202 - +0.4
79,202 - +0.1
79,210 + +0.3
79,210 + -0.4
79,267 + GFF6502 0.12 -0.1
79,267 + GFF6502 0.12 +0.3
79,267 + GFF6502 0.12 +0.0
79,267 + GFF6502 0.12 +0.1
79,268 - GFF6502 0.12 -0.6
79,268 - GFF6502 0.12 +0.3
79,271 + GFF6502 0.12 -0.2
79,271 + GFF6502 0.12 +0.5
79,272 - GFF6502 0.12 -0.4
79,272 - GFF6502 0.12 -1.5
79,280 - GFF6502 0.13 +0.2
79,378 + GFF6502 0.23 -0.1
79,378 + GFF6502 0.23 +0.4
79,378 + GFF6502 0.23 +0.4
79,378 + GFF6502 0.23 -1.1
79,379 - GFF6502 0.23 -0.4
79,379 - GFF6502 0.23 -1.2
79,665 - GFF6502 0.51 +1.0
79,768 + GFF6502 0.62 -0.3
79,768 + GFF6502 0.62 -1.0
79,769 - GFF6502 0.62 +0.9
79,769 - GFF6502 0.62 +0.0
79,769 - GFF6502 0.62 -0.7
79,769 - GFF6502 0.62 -1.5
80,032 + GFF6502 0.88 +0.3
80,033 - GFF6502 0.88 +0.2
80,073 - +0.3
80,073 - -0.6
80,089 - -0.0
80,089 - -0.6
80,089 - +2.1

Or see this region's nucleotide sequence