Strain Fitness in Variovorax sp. SCN45 around GFF6485

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6484 and GFF6485 are separated by 102 nucleotidesGFF6485 and GFF6486 are separated by 28 nucleotides GFF6484 - putative oxidoreductase, nitronate monooxygenase family, at 62,582 to 63,634 GFF6484 GFF6485 - hypothetical protein, at 63,737 to 64,711 GFF6485 GFF6486 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 64,740 to 66,041 GFF6486 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 62.916 kb on + strand, within GFF6484at 62.916 kb on + strand, within GFF6484at 62.916 kb on + strand, within GFF6484at 62.916 kb on + strand, within GFF6484at 62.917 kb on - strand, within GFF6484at 63.357 kb on + strand, within GFF6484at 63.357 kb on + strand, within GFF6484at 63.358 kb on - strand, within GFF6484at 63.358 kb on - strand, within GFF6484at 63.358 kb on - strand, within GFF6484at 63.358 kb on - strand, within GFF6484at 63.361 kb on - strand, within GFF6484at 63.361 kb on - strand, within GFF6484at 63.361 kb on - strand, within GFF6484at 63.361 kb on - strand, within GFF6484at 64.199 kb on + strand, within GFF6485at 64.199 kb on + strand, within GFF6485at 64.199 kb on + strand, within GFF6485at 64.200 kb on - strand, within GFF6485at 64.200 kb on - strand, within GFF6485at 64.259 kb on + strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.359 kb on - strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.524 kb on + strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.525 kb on - strand, within GFF6485at 64.649 kb on + strandat 64.649 kb on + strandat 64.649 kb on + strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.650 kb on - strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.670 kb on + strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.671 kb on - strandat 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.897 kb on + strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.898 kb on - strand, within GFF6486at 64.943 kb on + strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 64.944 kb on - strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.023 kb on + strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.024 kb on - strand, within GFF6486at 65.551 kb on + strand, within GFF6486at 65.551 kb on + strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.552 kb on - strand, within GFF6486at 65.593 kb on + strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486at 65.594 kb on - strand, within GFF6486

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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62,916 + GFF6484 0.32 -0.2
62,916 + GFF6484 0.32 -0.7
62,916 + GFF6484 0.32 -0.7
62,916 + GFF6484 0.32 -0.5
62,917 - GFF6484 0.32 -1.4
63,357 + GFF6484 0.74 -1.6
63,357 + GFF6484 0.74 +0.3
63,358 - GFF6484 0.74 -0.9
63,358 - GFF6484 0.74 -2.7
63,358 - GFF6484 0.74 -0.4
63,358 - GFF6484 0.74 -0.7
63,361 - GFF6484 0.74 -2.2
63,361 - GFF6484 0.74 -0.0
63,361 - GFF6484 0.74 -0.8
63,361 - GFF6484 0.74 -0.0
64,199 + GFF6485 0.47 -0.3
64,199 + GFF6485 0.47 +0.2
64,199 + GFF6485 0.47 +1.3
64,200 - GFF6485 0.47 -0.4
64,200 - GFF6485 0.47 -1.0
64,259 + GFF6485 0.54 -2.2
64,359 - GFF6485 0.64 -0.2
64,359 - GFF6485 0.64 -2.3
64,359 - GFF6485 0.64 +0.2
64,524 + GFF6485 0.81 -0.8
64,524 + GFF6485 0.81 -0.9
64,524 + GFF6485 0.81 -0.1
64,524 + GFF6485 0.81 -1.5
64,524 + GFF6485 0.81 -1.0
64,524 + GFF6485 0.81 -1.1
64,524 + GFF6485 0.81 +1.6
64,525 - GFF6485 0.81 -0.0
64,525 - GFF6485 0.81 -0.6
64,525 - GFF6485 0.81 +0.0
64,649 + +2.2
64,649 + -0.2
64,649 + +0.1
64,650 - +0.5
64,650 - -0.4
64,650 - -0.6
64,650 - +1.1
64,650 - +2.1
64,670 + +0.1
64,670 + +1.1
64,670 + -0.0
64,670 + -1.4
64,670 + -0.7
64,670 + -1.4
64,670 + -0.2
64,670 + -0.8
64,671 - -0.0
64,671 - -0.3
64,671 - -1.2
64,671 - +0.3
64,897 + GFF6486 0.12 +0.2
64,897 + GFF6486 0.12 +0.4
64,897 + GFF6486 0.12 +2.2
64,897 + GFF6486 0.12 +0.2
64,897 + GFF6486 0.12 -1.4
64,897 + GFF6486 0.12 +0.6
64,898 - GFF6486 0.12 +0.8
64,898 - GFF6486 0.12 -0.8
64,898 - GFF6486 0.12 -2.7
64,898 - GFF6486 0.12 +0.0
64,898 - GFF6486 0.12 -1.8
64,898 - GFF6486 0.12 -0.3
64,898 - GFF6486 0.12 -0.6
64,898 - GFF6486 0.12 +1.1
64,898 - GFF6486 0.12 +0.1
64,898 - GFF6486 0.12 +0.8
64,898 - GFF6486 0.12 -0.9
64,943 + GFF6486 0.16 -0.2
64,944 - GFF6486 0.16 -0.4
64,944 - GFF6486 0.16 -0.7
64,944 - GFF6486 0.16 -1.0
65,023 + GFF6486 0.22 -0.4
65,023 + GFF6486 0.22 -0.4
65,023 + GFF6486 0.22 +0.4
65,023 + GFF6486 0.22 +0.2
65,023 + GFF6486 0.22 -0.2
65,023 + GFF6486 0.22 +0.1
65,023 + GFF6486 0.22 -1.6
65,024 - GFF6486 0.22 +0.4
65,024 - GFF6486 0.22 -0.2
65,024 - GFF6486 0.22 -0.4
65,551 + GFF6486 0.62 -0.0
65,551 + GFF6486 0.62 +0.4
65,552 - GFF6486 0.62 -1.6
65,552 - GFF6486 0.62 -0.5
65,552 - GFF6486 0.62 -0.7
65,593 + GFF6486 0.66 +0.7
65,594 - GFF6486 0.66 -1.0
65,594 - GFF6486 0.66 -1.4
65,594 - GFF6486 0.66 +0.3
65,594 - GFF6486 0.66 -0.1
65,594 - GFF6486 0.66 +0.4
65,594 - GFF6486 0.66 -0.1
65,594 - GFF6486 0.66 -1.1

Or see this region's nucleotide sequence