Strain Fitness in Variovorax sp. SCN45 around GFF6401

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6399 and GFF6400 are separated by 40 nucleotidesGFF6400 and GFF6401 are separated by 11 nucleotidesGFF6401 and GFF6402 overlap by 4 nucleotides GFF6399 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain, at 73,425 to 74,477 GFF6399 GFF6400 - N-formylglutamate deformylase (EC 3.5.1.68), at 74,518 to 75,342 GFF6400 GFF6401 - Formiminoglutamic iminohydrolase (EC 3.5.3.13), at 75,354 to 76,736 GFF6401 GFF6402 - Imidazolonepropionase (EC 3.5.2.7), at 76,733 to 77,959 GFF6402 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.356 kb on + strand, within GFF6399at 74.459 kb on + strandat 74.460 kb on - strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.461 kb on + strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.462 kb on - strandat 74.477 kb on + strandat 74.477 kb on + strandat 74.478 kb on - strandat 74.478 kb on - strandat 74.490 kb on + strandat 74.490 kb on + strandat 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.636 kb on + strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.637 kb on - strand, within GFF6400at 74.694 kb on - strand, within GFF6400at 74.694 kb on - strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.708 kb on + strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.709 kb on - strand, within GFF6400at 74.744 kb on + strand, within GFF6400at 74.744 kb on + strand, within GFF6400at 74.951 kb on + strand, within GFF6400at 74.951 kb on + strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 74.952 kb on - strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.020 kb on + strand, within GFF6400at 75.021 kb on - strand, within GFF6400at 75.021 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.081 kb on - strand, within GFF6400at 75.120 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.122 kb on + strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.123 kb on - strand, within GFF6400at 75.176 kb on + strand, within GFF6400at 75.176 kb on + strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.177 kb on - strand, within GFF6400at 75.509 kb on + strand, within GFF6401at 75.509 kb on + strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.510 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.716 kb on - strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.883 kb on + strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.884 kb on - strand, within GFF6401at 75.890 kb on - strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.255 kb on + strand, within GFF6401at 76.339 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.369 kb on + strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.370 kb on - strand, within GFF6401at 76.417 kb on + strand, within GFF6401at 76.418 kb on - strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.474 kb on + strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.475 kb on - strand, within GFF6401at 76.804 kb on - strandat 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.091 kb on + strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.092 kb on - strand, within GFF6402at 77.094 kb on + strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.095 kb on - strand, within GFF6402at 77.194 kb on - strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.397 kb on + strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.398 kb on - strand, within GFF6402at 77.472 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.561 kb on + strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.562 kb on - strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.685 kb on + strand, within GFF6402at 77.686 kb on - strand, within GFF6402at 77.736 kb on + strand, within GFF6402

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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74,356 + GFF6399 0.88 -0.1
74,459 + -0.5
74,460 - +0.7
74,461 + +0.1
74,461 + +0.2
74,461 + -0.4
74,461 + -0.3
74,461 + +1.1
74,461 + +0.2
74,461 + +0.1
74,461 + +0.1
74,461 + -2.5
74,461 + +0.3
74,461 + -2.1
74,461 + +0.3
74,461 + -1.3
74,461 + +0.0
74,461 + -0.2
74,461 + -0.8
74,462 - -1.8
74,462 - -1.4
74,462 - -0.0
74,462 - -0.3
74,462 - -0.5
74,462 - -0.0
74,462 - -0.6
74,462 - -0.5
74,462 - +0.8
74,462 - -1.1
74,462 - -0.8
74,462 - +0.4
74,462 - -0.3
74,462 - +0.8
74,462 - -0.2
74,462 - +0.0
74,462 - -3.2
74,462 - -0.4
74,462 - +0.1
74,477 + -0.3
74,477 + -0.1
74,478 - +0.7
74,478 - -0.4
74,490 + +1.3
74,490 + -0.4
74,636 + GFF6400 0.14 +1.9
74,636 + GFF6400 0.14 -2.1
74,636 + GFF6400 0.14 -0.2
74,636 + GFF6400 0.14 -1.0
74,636 + GFF6400 0.14 +0.3
74,636 + GFF6400 0.14 +0.2
74,636 + GFF6400 0.14 -0.9
74,636 + GFF6400 0.14 +0.6
74,636 + GFF6400 0.14 -1.4
74,636 + GFF6400 0.14 -0.7
74,636 + GFF6400 0.14 -0.8
74,637 - GFF6400 0.14 -0.8
74,637 - GFF6400 0.14 -0.0
74,637 - GFF6400 0.14 +2.9
74,637 - GFF6400 0.14 -1.4
74,637 - GFF6400 0.14 +0.0
74,637 - GFF6400 0.14 +1.6
74,637 - GFF6400 0.14 +0.9
74,637 - GFF6400 0.14 +0.7
74,637 - GFF6400 0.14 -0.2
74,637 - GFF6400 0.14 +1.7
74,637 - GFF6400 0.14 +0.0
74,637 - GFF6400 0.14 -1.6
74,694 - GFF6400 0.21 -0.2
74,694 - GFF6400 0.21 +0.2
74,708 + GFF6400 0.23 -0.9
74,708 + GFF6400 0.23 -0.4
74,708 + GFF6400 0.23 -1.1
74,709 - GFF6400 0.23 -0.8
74,709 - GFF6400 0.23 +0.5
74,709 - GFF6400 0.23 -0.1
74,709 - GFF6400 0.23 -0.9
74,744 + GFF6400 0.27 -0.4
74,744 + GFF6400 0.27 +0.7
74,951 + GFF6400 0.52 +0.5
74,951 + GFF6400 0.52 -0.3
74,952 - GFF6400 0.53 +0.4
74,952 - GFF6400 0.53 -0.3
74,952 - GFF6400 0.53 +0.1
74,952 - GFF6400 0.53 -1.4
75,020 + GFF6400 0.61 -0.4
75,020 + GFF6400 0.61 -1.4
75,020 + GFF6400 0.61 -0.4
75,021 - GFF6400 0.61 +0.2
75,021 - GFF6400 0.61 +0.2
75,081 - GFF6400 0.68 +0.3
75,081 - GFF6400 0.68 -1.3
75,081 - GFF6400 0.68 -0.9
75,120 + GFF6400 0.73 -0.6
75,122 + GFF6400 0.73 -0.1
75,122 + GFF6400 0.73 +0.1
75,122 + GFF6400 0.73 -0.6
75,123 - GFF6400 0.73 -0.4
75,123 - GFF6400 0.73 -0.5
75,123 - GFF6400 0.73 -0.3
75,123 - GFF6400 0.73 -1.1
75,176 + GFF6400 0.80 +0.4
75,176 + GFF6400 0.80 -0.6
75,177 - GFF6400 0.80 -0.7
75,177 - GFF6400 0.80 -0.4
75,177 - GFF6400 0.80 +0.3
75,509 + GFF6401 0.11 -0.7
75,509 + GFF6401 0.11 +1.1
75,510 - GFF6401 0.11 -0.3
75,510 - GFF6401 0.11 -0.4
75,510 - GFF6401 0.11 -0.9
75,716 - GFF6401 0.26 -0.9
75,716 - GFF6401 0.26 -0.1
75,716 - GFF6401 0.26 -0.2
75,883 + GFF6401 0.38 +0.1
75,883 + GFF6401 0.38 -1.3
75,884 - GFF6401 0.38 +1.3
75,884 - GFF6401 0.38 -0.0
75,890 - GFF6401 0.39 +0.4
76,255 + GFF6401 0.65 +0.5
76,255 + GFF6401 0.65 -1.4
76,255 + GFF6401 0.65 +1.1
76,339 + GFF6401 0.71 -1.8
76,369 + GFF6401 0.73 -0.9
76,369 + GFF6401 0.73 -0.9
76,369 + GFF6401 0.73 +0.5
76,369 + GFF6401 0.73 -0.1
76,369 + GFF6401 0.73 -0.1
76,370 - GFF6401 0.73 -1.4
76,370 - GFF6401 0.73 +0.7
76,370 - GFF6401 0.73 -1.8
76,370 - GFF6401 0.73 +0.4
76,417 + GFF6401 0.77 -0.4
76,418 - GFF6401 0.77 +0.0
76,474 + GFF6401 0.81 -1.5
76,474 + GFF6401 0.81 +0.5
76,475 - GFF6401 0.81 -0.3
76,475 - GFF6401 0.81 +1.2
76,475 - GFF6401 0.81 -0.4
76,475 - GFF6401 0.81 +0.9
76,475 - GFF6401 0.81 -1.6
76,475 - GFF6401 0.81 -0.8
76,804 - -1.3
77,091 + GFF6402 0.29 -0.4
77,091 + GFF6402 0.29 -0.6
77,091 + GFF6402 0.29 -0.3
77,091 + GFF6402 0.29 -0.3
77,091 + GFF6402 0.29 -1.6
77,091 + GFF6402 0.29 +0.1
77,091 + GFF6402 0.29 -0.8
77,092 - GFF6402 0.29 -1.3
77,092 - GFF6402 0.29 -0.2
77,092 - GFF6402 0.29 -0.2
77,092 - GFF6402 0.29 +0.7
77,092 - GFF6402 0.29 +1.6
77,092 - GFF6402 0.29 -0.4
77,092 - GFF6402 0.29 +0.1
77,092 - GFF6402 0.29 -0.1
77,092 - GFF6402 0.29 -1.1
77,094 + GFF6402 0.29 +0.3
77,095 - GFF6402 0.30 -0.3
77,095 - GFF6402 0.30 -1.4
77,095 - GFF6402 0.30 -0.7
77,194 - GFF6402 0.38 +0.6
77,397 + GFF6402 0.54 +0.9
77,397 + GFF6402 0.54 -1.0
77,397 + GFF6402 0.54 -0.4
77,398 - GFF6402 0.54 -0.1
77,398 - GFF6402 0.54 +1.3
77,398 - GFF6402 0.54 -0.2
77,398 - GFF6402 0.54 -0.1
77,398 - GFF6402 0.54 -0.7
77,398 - GFF6402 0.54 +0.2
77,398 - GFF6402 0.54 -2.1
77,398 - GFF6402 0.54 -1.3
77,472 + GFF6402 0.60 -0.2
77,561 + GFF6402 0.67 -0.7
77,561 + GFF6402 0.67 +0.1
77,562 - GFF6402 0.68 +0.1
77,562 - GFF6402 0.68 +0.2
77,562 - GFF6402 0.68 +1.6
77,562 - GFF6402 0.68 -0.1
77,562 - GFF6402 0.68 -0.4
77,562 - GFF6402 0.68 +0.1
77,562 - GFF6402 0.68 -1.3
77,562 - GFF6402 0.68 -0.0
77,685 + GFF6402 0.78 +0.7
77,685 + GFF6402 0.78 +0.7
77,685 + GFF6402 0.78 +1.9
77,686 - GFF6402 0.78 -1.9
77,736 + GFF6402 0.82 -0.2

Or see this region's nucleotide sequence