Strain Fitness in Variovorax sp. SCN45 around GFF6300

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6299 and GFF6300 are separated by 4 nucleotidesGFF6300 and GFF6301 overlap by 8 nucleotides GFF6299 - BUG/TctC family periplasmic protein, at 88,087 to 89,067 GFF6299 GFF6300 - CaiB/BaiF family protein, at 89,072 to 90,262 GFF6300 GFF6301 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 90,255 to 91,193 GFF6301 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 88.088 kb on + strandat 88.089 kb on - strandat 88.089 kb on - strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.151 kb on + strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.152 kb on - strandat 88.331 kb on + strand, within GFF6299at 88.331 kb on + strand, within GFF6299at 88.331 kb on + strand, within GFF6299at 88.331 kb on + strand, within GFF6299at 88.331 kb on + strand, within GFF6299at 88.331 kb on + strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.332 kb on - strand, within GFF6299at 88.454 kb on + strand, within GFF6299at 88.454 kb on + strand, within GFF6299at 88.454 kb on + strand, within GFF6299at 88.454 kb on + strand, within GFF6299at 88.454 kb on + strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.455 kb on - strand, within GFF6299at 88.505 kb on + strand, within GFF6299at 88.505 kb on + strand, within GFF6299at 88.505 kb on + strand, within GFF6299at 88.505 kb on + strand, within GFF6299at 88.505 kb on + strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.506 kb on - strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.649 kb on + strand, within GFF6299at 88.650 kb on - strand, within GFF6299at 88.650 kb on - strand, within GFF6299at 88.650 kb on - strand, within GFF6299at 88.650 kb on - strand, within GFF6299at 88.730 kb on + strand, within GFF6299at 88.730 kb on + strand, within GFF6299at 88.731 kb on - strand, within GFF6299at 88.731 kb on - strand, within GFF6299at 88.731 kb on - strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.796 kb on + strand, within GFF6299at 88.797 kb on - strand, within GFF6299at 88.797 kb on - strand, within GFF6299at 88.797 kb on - strand, within GFF6299at 88.797 kb on - strand, within GFF6299at 88.797 kb on - strand, within GFF6299at 88.833 kb on + strand, within GFF6299at 88.946 kb on + strand, within GFF6299at 88.947 kb on - strand, within GFF6299at 88.947 kb on - strand, within GFF6299at 88.947 kb on - strand, within GFF6299at 88.947 kb on - strand, within GFF6299at 89.127 kb on + strandat 89.127 kb on + strandat 89.128 kb on - strandat 89.568 kb on + strand, within GFF6300at 89.568 kb on + strand, within GFF6300at 89.568 kb on + strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.569 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.818 kb on - strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.871 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.904 kb on + strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.905 kb on - strand, within GFF6300at 89.940 kb on + strand, within GFF6300at 89.940 kb on + strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 89.941 kb on - strand, within GFF6300at 90.237 kb on + strandat 90.237 kb on + strandat 90.237 kb on + strandat 90.237 kb on + strandat 90.238 kb on - strandat 90.322 kb on + strandat 90.322 kb on + strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.323 kb on - strandat 90.466 kb on + strand, within GFF6301at 90.466 kb on + strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.467 kb on - strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.646 kb on + strand, within GFF6301at 90.647 kb on - strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.084 kb on + strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301at 91.085 kb on - strand, within GFF6301

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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88,088 + -2.1
88,089 - -0.5
88,089 - +0.8
88,151 + +0.1
88,151 + -2.0
88,151 + -0.0
88,151 + -0.2
88,151 + +0.6
88,151 + -0.8
88,151 + -0.5
88,151 + +0.4
88,151 + -1.8
88,151 + -1.3
88,151 + -0.8
88,152 - -0.8
88,152 - +0.3
88,152 - -0.3
88,152 - -0.5
88,152 - +0.4
88,152 - +0.0
88,152 - +0.0
88,152 - -0.8
88,152 - -0.5
88,152 - -0.8
88,152 - -0.5
88,152 - +0.4
88,152 - -1.0
88,152 - +1.0
88,152 - +0.5
88,331 + GFF6299 0.25 -0.8
88,331 + GFF6299 0.25 -0.6
88,331 + GFF6299 0.25 +3.8
88,331 + GFF6299 0.25 +0.3
88,331 + GFF6299 0.25 +0.5
88,331 + GFF6299 0.25 -0.5
88,332 - GFF6299 0.25 +0.6
88,332 - GFF6299 0.25 -0.7
88,332 - GFF6299 0.25 -0.1
88,332 - GFF6299 0.25 -0.1
88,332 - GFF6299 0.25 -1.9
88,332 - GFF6299 0.25 -0.3
88,332 - GFF6299 0.25 -0.2
88,332 - GFF6299 0.25 -0.0
88,332 - GFF6299 0.25 +0.3
88,332 - GFF6299 0.25 -1.6
88,332 - GFF6299 0.25 +0.1
88,454 + GFF6299 0.37 -0.1
88,454 + GFF6299 0.37 -0.3
88,454 + GFF6299 0.37 +1.2
88,454 + GFF6299 0.37 +0.1
88,454 + GFF6299 0.37 +0.8
88,455 - GFF6299 0.38 -0.5
88,455 - GFF6299 0.38 -0.6
88,455 - GFF6299 0.38 -1.2
88,455 - GFF6299 0.38 -0.8
88,455 - GFF6299 0.38 +0.2
88,455 - GFF6299 0.38 +0.4
88,455 - GFF6299 0.38 -0.4
88,455 - GFF6299 0.38 +0.5
88,455 - GFF6299 0.38 +0.0
88,455 - GFF6299 0.38 -0.3
88,455 - GFF6299 0.38 +1.2
88,505 + GFF6299 0.43 -0.9
88,505 + GFF6299 0.43 +0.2
88,505 + GFF6299 0.43 +0.0
88,505 + GFF6299 0.43 -0.0
88,505 + GFF6299 0.43 -0.0
88,506 - GFF6299 0.43 +0.3
88,506 - GFF6299 0.43 -0.8
88,506 - GFF6299 0.43 -2.8
88,506 - GFF6299 0.43 -0.4
88,506 - GFF6299 0.43 -0.2
88,506 - GFF6299 0.43 -0.3
88,506 - GFF6299 0.43 -0.2
88,506 - GFF6299 0.43 -0.6
88,506 - GFF6299 0.43 +0.1
88,506 - GFF6299 0.43 -1.5
88,506 - GFF6299 0.43 +1.2
88,506 - GFF6299 0.43 -0.2
88,506 - GFF6299 0.43 +0.1
88,649 + GFF6299 0.57 -1.8
88,649 + GFF6299 0.57 +0.1
88,649 + GFF6299 0.57 -0.4
88,649 + GFF6299 0.57 +0.5
88,649 + GFF6299 0.57 +0.3
88,649 + GFF6299 0.57 -0.3
88,650 - GFF6299 0.57 -0.2
88,650 - GFF6299 0.57 +0.1
88,650 - GFF6299 0.57 -0.1
88,650 - GFF6299 0.57 +0.1
88,730 + GFF6299 0.66 +0.2
88,730 + GFF6299 0.66 +0.4
88,731 - GFF6299 0.66 -0.2
88,731 - GFF6299 0.66 +0.1
88,731 - GFF6299 0.66 -1.3
88,796 + GFF6299 0.72 -0.8
88,796 + GFF6299 0.72 -1.3
88,796 + GFF6299 0.72 -1.1
88,796 + GFF6299 0.72 -0.5
88,796 + GFF6299 0.72 -0.6
88,796 + GFF6299 0.72 +1.4
88,796 + GFF6299 0.72 +0.7
88,797 - GFF6299 0.72 -1.1
88,797 - GFF6299 0.72 +0.2
88,797 - GFF6299 0.72 +0.4
88,797 - GFF6299 0.72 -0.1
88,797 - GFF6299 0.72 -0.1
88,833 + GFF6299 0.76 -0.5
88,946 + GFF6299 0.88 -0.8
88,947 - GFF6299 0.88 -3.3
88,947 - GFF6299 0.88 +0.5
88,947 - GFF6299 0.88 +0.2
88,947 - GFF6299 0.88 -0.0
89,127 + -0.4
89,127 + -1.0
89,128 - -0.2
89,568 + GFF6300 0.42 +1.2
89,568 + GFF6300 0.42 +0.6
89,568 + GFF6300 0.42 -0.1
89,569 - GFF6300 0.42 +0.4
89,569 - GFF6300 0.42 -0.2
89,569 - GFF6300 0.42 +0.6
89,569 - GFF6300 0.42 -0.4
89,569 - GFF6300 0.42 +0.8
89,569 - GFF6300 0.42 +0.1
89,569 - GFF6300 0.42 +0.2
89,569 - GFF6300 0.42 +1.2
89,569 - GFF6300 0.42 -0.5
89,569 - GFF6300 0.42 -1.3
89,818 - GFF6300 0.63 +0.2
89,818 - GFF6300 0.63 +0.5
89,818 - GFF6300 0.63 -1.3
89,818 - GFF6300 0.63 +0.0
89,818 - GFF6300 0.63 +1.1
89,818 - GFF6300 0.63 -0.6
89,818 - GFF6300 0.63 -0.3
89,818 - GFF6300 0.63 -1.3
89,818 - GFF6300 0.63 +1.3
89,818 - GFF6300 0.63 -0.3
89,818 - GFF6300 0.63 -0.5
89,818 - GFF6300 0.63 -0.2
89,818 - GFF6300 0.63 -0.0
89,871 + GFF6300 0.67 -0.2
89,871 + GFF6300 0.67 -1.6
89,871 + GFF6300 0.67 +0.8
89,904 + GFF6300 0.70 -0.2
89,904 + GFF6300 0.70 +0.8
89,904 + GFF6300 0.70 -1.9
89,904 + GFF6300 0.70 -0.4
89,904 + GFF6300 0.70 +0.5
89,904 + GFF6300 0.70 +0.5
89,904 + GFF6300 0.70 +0.8
89,904 + GFF6300 0.70 +0.2
89,904 + GFF6300 0.70 -0.0
89,904 + GFF6300 0.70 +0.2
89,904 + GFF6300 0.70 -1.0
89,904 + GFF6300 0.70 -0.2
89,904 + GFF6300 0.70 -0.4
89,904 + GFF6300 0.70 -1.6
89,904 + GFF6300 0.70 +0.0
89,904 + GFF6300 0.70 +1.5
89,904 + GFF6300 0.70 -1.9
89,905 - GFF6300 0.70 -0.7
89,905 - GFF6300 0.70 +0.1
89,905 - GFF6300 0.70 -0.5
89,905 - GFF6300 0.70 -0.7
89,905 - GFF6300 0.70 +0.0
89,905 - GFF6300 0.70 +0.4
89,905 - GFF6300 0.70 -0.1
89,905 - GFF6300 0.70 -1.3
89,905 - GFF6300 0.70 +0.4
89,905 - GFF6300 0.70 -0.5
89,905 - GFF6300 0.70 +0.3
89,905 - GFF6300 0.70 +0.6
89,905 - GFF6300 0.70 -0.4
89,905 - GFF6300 0.70 -1.0
89,905 - GFF6300 0.70 -0.7
89,905 - GFF6300 0.70 -1.3
89,940 + GFF6300 0.73 +0.0
89,940 + GFF6300 0.73 -1.7
89,941 - GFF6300 0.73 +0.3
89,941 - GFF6300 0.73 -0.5
89,941 - GFF6300 0.73 -0.5
90,237 + -0.3
90,237 + -0.3
90,237 + -0.8
90,237 + +1.6
90,238 - -0.6
90,322 + -0.3
90,322 + -0.0
90,323 - -1.0
90,323 - -1.2
90,323 - +0.3
90,466 + GFF6301 0.22 -1.0
90,466 + GFF6301 0.22 -1.0
90,467 - GFF6301 0.23 -1.0
90,467 - GFF6301 0.23 +0.0
90,467 - GFF6301 0.23 -0.4
90,646 + GFF6301 0.42 -0.3
90,646 + GFF6301 0.42 +0.2
90,646 + GFF6301 0.42 +0.9
90,646 + GFF6301 0.42 -0.9
90,646 + GFF6301 0.42 -0.0
90,646 + GFF6301 0.42 +0.2
90,646 + GFF6301 0.42 +0.4
90,647 - GFF6301 0.42 -1.0
91,084 + GFF6301 0.88 -0.7
91,084 + GFF6301 0.88 +0.3
91,084 + GFF6301 0.88 -0.3
91,085 - GFF6301 0.88 +0.4
91,085 - GFF6301 0.88 +0.8
91,085 - GFF6301 0.88 -0.1

Or see this region's nucleotide sequence