Strain Fitness in Variovorax sp. SCN45 around GFF6250

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6249 and GFF6250 overlap by 4 nucleotidesGFF6250 and GFF6251 are separated by 19 nucleotidesGFF6251 and GFF6252 are separated by 10 nucleotides GFF6249 - Transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 42,942 to 44,213 GFF6249 GFF6250 - Glutamate--cysteine ligase-like protein YbdK, at 44,210 to 45,430 GFF6250 GFF6251 - hypothetical protein, at 45,450 to 46,019 GFF6251 GFF6252 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 46,030 to 46,833 GFF6252 Position (kb) 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.311 kb on + strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.495 kb on - strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 44.390 kb on + strand, within GFF6250at 44.391 kb on - strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.639 kb on + strand, within GFF6250at 44.640 kb on - strand, within GFF6250at 44.675 kb on + strand, within GFF6250at 44.675 kb on + strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.676 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.778 kb on - strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.781 kb on + strand, within GFF6250at 44.782 kb on - strand, within GFF6250at 44.928 kb on - strand, within GFF6250at 44.928 kb on - strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.074 kb on + strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.075 kb on - strand, within GFF6250at 45.137 kb on + strand, within GFF6250at 45.147 kb on - strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.152 kb on + strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.153 kb on - strand, within GFF6250at 45.194 kb on + strand, within GFF6250at 45.194 kb on + strand, within GFF6250at 45.195 kb on - strand, within GFF6250at 45.493 kb on + strandat 45.494 kb on - strandat 45.494 kb on - strandat 45.545 kb on - strand, within GFF6251at 45.775 kb on + strand, within GFF6251at 45.775 kb on + strand, within GFF6251at 45.775 kb on + strand, within GFF6251at 45.776 kb on - strand, within GFF6251at 45.776 kb on - strand, within GFF6251at 46.031 kb on + strandat 46.031 kb on + strandat 46.032 kb on - strandat 46.032 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
43,299 + GFF6249 0.28 -1.8
43,299 + GFF6249 0.28 -0.6
43,299 + GFF6249 0.28 -1.6
43,299 + GFF6249 0.28 -1.0
43,300 - GFF6249 0.28 -0.2
43,300 - GFF6249 0.28 -1.8
43,311 + GFF6249 0.29 -1.5
43,312 - GFF6249 0.29 +0.1
43,312 - GFF6249 0.29 -2.3
43,476 + GFF6249 0.42 -2.3
43,476 + GFF6249 0.42 -2.8
43,476 + GFF6249 0.42 -1.8
43,476 + GFF6249 0.42 -1.0
43,476 + GFF6249 0.42 -1.5
43,476 + GFF6249 0.42 -1.8
43,477 - GFF6249 0.42 -1.2
43,477 - GFF6249 0.42 -1.4
43,477 - GFF6249 0.42 -0.2
43,477 - GFF6249 0.42 -0.9
43,495 - GFF6249 0.43 -2.6
43,666 + GFF6249 0.57 -0.6
43,666 + GFF6249 0.57 -1.4
43,666 + GFF6249 0.57 -2.7
43,666 + GFF6249 0.57 -1.3
44,390 + GFF6250 0.15 -1.2
44,391 - GFF6250 0.15 -2.2
44,639 + GFF6250 0.35 -1.1
44,639 + GFF6250 0.35 -2.0
44,639 + GFF6250 0.35 -2.6
44,639 + GFF6250 0.35 -0.9
44,640 - GFF6250 0.35 -2.2
44,675 + GFF6250 0.38 -0.9
44,675 + GFF6250 0.38 -1.1
44,676 - GFF6250 0.38 -1.2
44,676 - GFF6250 0.38 -2.2
44,676 - GFF6250 0.38 -0.1
44,676 - GFF6250 0.38 -3.2
44,778 - GFF6250 0.47 -1.1
44,778 - GFF6250 0.47 -0.8
44,778 - GFF6250 0.47 -1.8
44,781 + GFF6250 0.47 -2.6
44,781 + GFF6250 0.47 -0.8
44,781 + GFF6250 0.47 -1.2
44,781 + GFF6250 0.47 -0.9
44,782 - GFF6250 0.47 -1.3
44,928 - GFF6250 0.59 -1.9
44,928 - GFF6250 0.59 -0.4
45,074 + GFF6250 0.71 -1.6
45,074 + GFF6250 0.71 -0.6
45,074 + GFF6250 0.71 -1.6
45,074 + GFF6250 0.71 -1.9
45,075 - GFF6250 0.71 -1.8
45,075 - GFF6250 0.71 -2.0
45,075 - GFF6250 0.71 -1.9
45,075 - GFF6250 0.71 -1.2
45,137 + GFF6250 0.76 -1.2
45,147 - GFF6250 0.77 -2.7
45,152 + GFF6250 0.77 -0.7
45,152 + GFF6250 0.77 -2.1
45,152 + GFF6250 0.77 -2.1
45,152 + GFF6250 0.77 -1.0
45,152 + GFF6250 0.77 -2.1
45,153 - GFF6250 0.77 +1.8
45,153 - GFF6250 0.77 -0.6
45,153 - GFF6250 0.77 -1.9
45,153 - GFF6250 0.77 -1.1
45,153 - GFF6250 0.77 -2.2
45,194 + GFF6250 0.81 -1.5
45,194 + GFF6250 0.81 -1.8
45,195 - GFF6250 0.81 -0.2
45,493 + -0.4
45,494 - +0.1
45,494 - -0.0
45,545 - GFF6251 0.17 -0.2
45,775 + GFF6251 0.57 +0.8
45,775 + GFF6251 0.57 -0.5
45,775 + GFF6251 0.57 +0.5
45,776 - GFF6251 0.57 -0.7
45,776 - GFF6251 0.57 +0.8
46,031 + -1.6
46,031 + +0.8
46,032 - -0.5
46,032 - -2.2

Or see this region's nucleotide sequence