Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6195 and GFF6196 are separated by 7 nucleotides GFF6196 and GFF6197 overlap by 4 nucleotides GFF6197 and GFF6198 are separated by 39 nucleotides
GFF6195 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 101,919 to 102,926
GFF6195
GFF6196 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 102,934 to 103,815
GFF6196
GFF6197 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 103,812 to 104,762
GFF6197
GFF6198 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 104,802 to 105,884
GFF6198
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 103.532 kb on - strand, within GFF6196 at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.816 kb on - strand at 103.978 kb on + strand, within GFF6197 at 103.978 kb on + strand, within GFF6197 at 104.190 kb on + strand, within GFF6197 at 104.190 kb on + strand, within GFF6197 at 104.521 kb on + strand, within GFF6197 at 104.935 kb on + strand, within GFF6198 at 105.287 kb on - strand, within GFF6198 at 105.371 kb on - strand, within GFF6198 at 105.469 kb on + strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.470 kb on - strand, within GFF6198 at 105.580 kb on + strand, within GFF6198 at 105.581 kb on - strand, within GFF6198 at 105.581 kb on - strand, within GFF6198 at 105.670 kb on + strand, within GFF6198 at 105.670 kb on + strand, within GFF6198 at 105.671 kb on - strand, within GFF6198 at 105.671 kb on - strand, within GFF6198 at 105.736 kb on + strand, within GFF6198 at 105.736 kb on + strand, within GFF6198 at 105.737 kb on - strand, within GFF6198 at 105.737 kb on - strand, within GFF6198
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 103,532 - GFF6196 0.68 -0.7 103,816 - -1.3 103,816 - -0.6 103,816 - -1.5 103,816 - -0.2 103,978 + GFF6197 0.17 -1.3 103,978 + GFF6197 0.17 -2.1 104,190 + GFF6197 0.40 +0.1 104,190 + GFF6197 0.40 -0.8 104,521 + GFF6197 0.75 -1.8 104,935 + GFF6198 0.12 -1.6 105,287 - GFF6198 0.45 -0.7 105,371 - GFF6198 0.53 -1.0 105,469 + GFF6198 0.62 +1.3 105,470 - GFF6198 0.62 -0.6 105,470 - GFF6198 0.62 -0.7 105,470 - GFF6198 0.62 +0.2 105,580 + GFF6198 0.72 -0.1 105,581 - GFF6198 0.72 +0.4 105,581 - GFF6198 0.72 -1.3 105,670 + GFF6198 0.80 -1.3 105,670 + GFF6198 0.80 -0.8 105,671 - GFF6198 0.80 -0.6 105,671 - GFF6198 0.80 +0.4 105,736 + GFF6198 0.86 -0.9 105,736 + GFF6198 0.86 +1.7 105,737 - GFF6198 0.86 -0.4 105,737 - GFF6198 0.86 +0.2
Or see this region's nucleotide sequence