Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6115 and GFF6116 are separated by 50 nucleotides GFF6116 and GFF6117 are separated by 43 nucleotides
GFF6115 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 14,092 to 15,681
GFF6115
GFF6116 - MlrC, at 15,732 to 17,186
GFF6116
GFF6117 - Glycine/D-amino acid oxidases (deaminating), at 17,230 to 18,384
GFF6117
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 14.889 kb on - strand, within GFF6115 at 14.966 kb on + strand, within GFF6115 at 14.967 kb on - strand, within GFF6115 at 15.000 kb on - strand, within GFF6115 at 15.041 kb on + strand, within GFF6115 at 15.041 kb on + strand, within GFF6115 at 15.041 kb on + strand, within GFF6115 at 15.041 kb on + strand, within GFF6115 at 15.041 kb on + strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.042 kb on - strand, within GFF6115 at 15.435 kb on - strand, within GFF6115 at 15.435 kb on - strand, within GFF6115 at 15.504 kb on - strand, within GFF6115 at 15.524 kb on + strand at 15.524 kb on + strand at 15.524 kb on + strand at 15.525 kb on - strand at 15.781 kb on + strand at 15.829 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.865 kb on + strand at 15.866 kb on - strand at 15.866 kb on - strand at 15.866 kb on - strand at 16.357 kb on + strand, within GFF6116 at 16.357 kb on + strand, within GFF6116 at 16.447 kb on + strand, within GFF6116 at 16.447 kb on + strand, within GFF6116 at 16.706 kb on - strand, within GFF6116 at 16.949 kb on - strand, within GFF6116 at 17.214 kb on + strand at 17.215 kb on - strand at 17.366 kb on + strand, within GFF6117 at 17.618 kb on + strand, within GFF6117 at 17.618 kb on + strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.796 kb on - strand, within GFF6117 at 17.952 kb on - strand, within GFF6117
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 14,889 - GFF6115 0.50 -0.0 14,966 + GFF6115 0.55 -0.1 14,967 - GFF6115 0.55 -0.8 15,000 - GFF6115 0.57 -0.6 15,041 + GFF6115 0.60 -0.8 15,041 + GFF6115 0.60 +1.5 15,041 + GFF6115 0.60 +0.4 15,041 + GFF6115 0.60 +0.0 15,041 + GFF6115 0.60 -0.9 15,042 - GFF6115 0.60 -0.2 15,042 - GFF6115 0.60 -0.2 15,042 - GFF6115 0.60 +0.3 15,042 - GFF6115 0.60 -0.6 15,042 - GFF6115 0.60 +0.2 15,042 - GFF6115 0.60 +0.4 15,042 - GFF6115 0.60 +0.3 15,042 - GFF6115 0.60 -0.1 15,435 - GFF6115 0.84 -0.2 15,435 - GFF6115 0.84 -1.3 15,504 - GFF6115 0.89 +0.1 15,524 + -0.1 15,524 + -0.6 15,524 + +0.0 15,525 - -0.3 15,781 + +0.3 15,829 + -0.4 15,865 + -1.2 15,865 + +0.4 15,865 + -0.1 15,865 + -0.5 15,865 + -0.6 15,865 + -0.7 15,865 + +0.4 15,866 - -0.6 15,866 - -0.4 15,866 - -0.0 16,357 + GFF6116 0.43 -0.6 16,357 + GFF6116 0.43 -1.6 16,447 + GFF6116 0.49 -2.2 16,447 + GFF6116 0.49 -1.3 16,706 - GFF6116 0.67 -1.6 16,949 - GFF6116 0.84 -2.7 17,214 + +0.3 17,215 - +0.5 17,366 + GFF6117 0.12 -0.7 17,618 + GFF6117 0.34 -0.3 17,618 + GFF6117 0.34 +0.3 17,619 - GFF6117 0.34 +0.0 17,619 - GFF6117 0.34 +0.4 17,796 - GFF6117 0.49 -0.5 17,952 - GFF6117 0.63 -0.5
Or see this region's nucleotide sequence