Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5603 and GFF5604 are separated by 116 nucleotides GFF5604 and GFF5605 are separated by 1 nucleotides GFF5605 and GFF5606 are separated by 1 nucleotides
GFF5603 - D-xylose ABC transporter, substrate-binding protein XylF, at 221,746 to 222,768
GFF5603
GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075
GFF5604
GFF5605 - D-xylose ABC transporter, ATP-binding protein XylG, at 224,077 to 224,874
GFF5605
GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039
GFF5606
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.766 kb on + strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 222.767 kb on - strand at 223.023 kb on + strand, within GFF5604 at 223.023 kb on + strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.024 kb on - strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.158 kb on + strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.159 kb on - strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.227 kb on + strand, within GFF5604 at 223.228 kb on - strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.572 kb on + strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.573 kb on - strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.683 kb on + strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.684 kb on - strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.857 kb on + strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 223.858 kb on - strand, within GFF5604 at 224.049 kb on + strand at 224.179 kb on + strand, within GFF5605 at 224.180 kb on - strand, within GFF5605 at 224.350 kb on + strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.767 kb on + strand, within GFF5605 at 224.768 kb on - strand, within GFF5605
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 221,908 + GFF5603 0.16 -2.5 221,908 + GFF5603 0.16 -2.3 221,908 + GFF5603 0.16 -3.4 221,908 + GFF5603 0.16 -2.8 221,908 + GFF5603 0.16 -2.5 221,908 + GFF5603 0.16 -2.2 221,908 + GFF5603 0.16 +0.3 221,909 - GFF5603 0.16 -1.9 221,909 - GFF5603 0.16 -2.9 221,909 - GFF5603 0.16 -0.8 221,909 - GFF5603 0.16 -2.4 222,071 - GFF5603 0.32 -2.0 222,071 - GFF5603 0.32 -2.4 222,071 - GFF5603 0.32 -1.7 222,071 - GFF5603 0.32 -2.2 222,103 + GFF5603 0.35 -1.2 222,103 + GFF5603 0.35 -1.4 222,103 + GFF5603 0.35 -1.7 222,103 + GFF5603 0.35 +1.5 222,103 + GFF5603 0.35 -1.1 222,103 + GFF5603 0.35 -2.5 222,103 + GFF5603 0.35 -2.4 222,103 + GFF5603 0.35 -2.8 222,103 + GFF5603 0.35 -0.4 222,103 + GFF5603 0.35 -1.4 222,103 + GFF5603 0.35 -0.7 222,103 + GFF5603 0.35 -1.5 222,104 - GFF5603 0.35 -0.2 222,104 - GFF5603 0.35 -1.8 222,104 - GFF5603 0.35 -1.8 222,104 - GFF5603 0.35 -1.7 222,104 - GFF5603 0.35 -0.9 222,104 - GFF5603 0.35 -1.0 222,178 + GFF5603 0.42 -0.2 222,178 + GFF5603 0.42 -2.4 222,178 + GFF5603 0.42 -3.0 222,178 + GFF5603 0.42 -2.6 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 +0.1 222,178 + GFF5603 0.42 -3.1 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 -1.9 222,178 + GFF5603 0.42 -1.8 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 +1.9 222,178 + GFF5603 0.42 -0.2 222,179 - GFF5603 0.42 -1.5 222,179 - GFF5603 0.42 -1.9 222,179 - GFF5603 0.42 -0.4 222,179 - GFF5603 0.42 -1.1 222,179 - GFF5603 0.42 -2.3 222,179 - GFF5603 0.42 -2.1 222,179 - GFF5603 0.42 -1.5 222,179 - GFF5603 0.42 -2.3 222,179 - GFF5603 0.42 -1.4 222,295 + GFF5603 0.54 -1.8 222,295 + GFF5603 0.54 -1.8 222,295 + GFF5603 0.54 -2.1 222,296 - GFF5603 0.54 -1.1 222,296 - GFF5603 0.54 -0.5 222,766 + -0.5 222,766 + -1.3 222,766 + -0.1 222,766 + -0.7 222,766 + -1.3 222,766 + +0.3 222,767 - -0.7 222,767 - -0.1 222,767 - -0.6 222,767 - +1.9 222,767 - -0.2 222,767 - -0.7 222,767 - -1.4 223,023 + GFF5604 0.12 -2.6 223,023 + GFF5604 0.12 -0.6 223,024 - GFF5604 0.12 -1.1 223,024 - GFF5604 0.12 -0.2 223,024 - GFF5604 0.12 -1.2 223,158 + GFF5604 0.23 -2.9 223,158 + GFF5604 0.23 -1.7 223,158 + GFF5604 0.23 -1.4 223,158 + GFF5604 0.23 -1.7 223,158 + GFF5604 0.23 -0.9 223,158 + GFF5604 0.23 -2.8 223,158 + GFF5604 0.23 -1.3 223,159 - GFF5604 0.23 -1.1 223,159 - GFF5604 0.23 -2.0 223,159 - GFF5604 0.23 -1.4 223,159 - GFF5604 0.23 -0.8 223,159 - GFF5604 0.23 -0.6 223,159 - GFF5604 0.23 -1.3 223,227 + GFF5604 0.29 -3.9 223,227 + GFF5604 0.29 +0.7 223,227 + GFF5604 0.29 -0.1 223,228 - GFF5604 0.29 -1.7 223,572 + GFF5604 0.58 -0.4 223,572 + GFF5604 0.58 -1.6 223,573 - GFF5604 0.58 -0.2 223,573 - GFF5604 0.58 -2.3 223,683 + GFF5604 0.67 -1.9 223,683 + GFF5604 0.67 -1.7 223,683 + GFF5604 0.67 -1.4 223,683 + GFF5604 0.67 -1.9 223,684 - GFF5604 0.67 -1.2 223,684 - GFF5604 0.67 -1.9 223,684 - GFF5604 0.67 -2.4 223,684 - GFF5604 0.67 -0.1 223,684 - GFF5604 0.67 -0.9 223,857 + GFF5604 0.82 +0.0 223,857 + GFF5604 0.82 -0.8 223,857 + GFF5604 0.82 -1.3 223,857 + GFF5604 0.82 -3.6 223,858 - GFF5604 0.82 -2.4 223,858 - GFF5604 0.82 -1.1 223,858 - GFF5604 0.82 -3.1 223,858 - GFF5604 0.82 -2.4 223,858 - GFF5604 0.82 -1.4 223,858 - GFF5604 0.82 +0.1 224,049 + -2.4 224,179 + GFF5605 0.13 -1.0 224,180 - GFF5605 0.13 -2.0 224,350 + GFF5605 0.34 -1.1 224,351 - GFF5605 0.34 -1.6 224,351 - GFF5605 0.34 -1.5 224,351 - GFF5605 0.34 -2.4 224,569 + GFF5605 0.62 -1.6 224,569 + GFF5605 0.62 -1.4 224,570 - GFF5605 0.62 +0.1 224,570 - GFF5605 0.62 -1.8 224,767 + GFF5605 0.86 -0.1 224,768 - GFF5605 0.87 -3.3
Or see this region's nucleotide sequence