Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5526 and GFF5527 are separated by 116 nucleotides GFF5527 and GFF5528 are separated by 27 nucleotides GFF5528 and GFF5529 overlap by 4 nucleotides GFF5529 and GFF5530 are separated by 18 nucleotides
GFF5526 - Lysophospholipid transporter LplT / 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40), at 155,699 to 157,660
GFF5526
GFF5527 - Asl0046 protein, at 157,777 to 158,292
GFF5527
GFF5528 - Conjugative transfer protein TrbL, at 158,320 to 158,799
GFF5528
GFF5529 - Putative outer membrane protein, at 158,796 to 159,599
GFF5529
GFF5530 - FIG00931903: hypothetical protein, at 159,618 to 160,655
GFF5530
Position (kb) 158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.416 kb on - strand, within GFF5526 at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.493 kb on + strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.494 kb on - strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.506 kb on + strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.761 kb on - strand at 157.761 kb on - strand at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.936 kb on + strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 157.937 kb on - strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.119 kb on + strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.120 kb on - strand, within GFF5527 at 158.266 kb on - strand at 158.290 kb on + strand at 158.290 kb on + strand at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.593 kb on + strand, within GFF5528 at 158.594 kb on - strand, within GFF5528 at 158.594 kb on - strand, within GFF5528 at 158.594 kb on - strand, within GFF5528 at 158.779 kb on + strand at 158.779 kb on + strand at 158.779 kb on + strand at 158.779 kb on + strand at 158.779 kb on + strand at 158.780 kb on - strand at 158.780 kb on - strand at 158.780 kb on - strand at 158.780 kb on - strand at 158.780 kb on - strand at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.012 kb on + strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.013 kb on - strand, within GFF5529 at 159.024 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.045 kb on + strand, within GFF5529 at 159.046 kb on - strand, within GFF5529 at 159.046 kb on - strand, within GFF5529 at 159.117 kb on + strand, within GFF5529 at 159.117 kb on + strand, within GFF5529 at 159.117 kb on + strand, within GFF5529 at 159.118 kb on - strand, within GFF5529 at 159.163 kb on - strand, within GFF5529 at 159.264 kb on + strand, within GFF5529 at 159.264 kb on + strand, within GFF5529 at 159.264 kb on + strand, within GFF5529 at 159.264 kb on + strand, within GFF5529 at 159.265 kb on - strand, within GFF5529 at 159.265 kb on - strand, within GFF5529 at 159.265 kb on - strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.279 kb on + strand, within GFF5529 at 159.280 kb on - strand, within GFF5529 at 159.280 kb on - strand, within GFF5529 at 159.297 kb on + strand, within GFF5529 at 159.297 kb on + strand, within GFF5529 at 159.297 kb on + strand, within GFF5529 at 159.297 kb on + strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.298 kb on - strand, within GFF5529 at 159.402 kb on + strand, within GFF5529 at 159.402 kb on + strand, within GFF5529 at 159.402 kb on + strand, within GFF5529 at 159.424 kb on + strand, within GFF5529 at 159.424 kb on + strand, within GFF5529 at 159.425 kb on - strand, within GFF5529
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 157,416 - GFF5526 0.88 +0.6 157,493 + -0.5 157,493 + -0.3 157,493 + +0.2 157,493 + +0.0 157,493 + -0.9 157,493 + +0.2 157,493 + +0.3 157,493 + +1.7 157,493 + +0.9 157,493 + +0.9 157,493 + +0.3 157,493 + -0.9 157,493 + -0.3 157,494 - -0.4 157,494 - +1.0 157,494 - +1.9 157,494 - -0.4 157,494 - -0.5 157,494 - -0.9 157,494 - -0.2 157,506 + +0.3 157,506 + -1.4 157,506 + -0.3 157,506 + +0.1 157,506 + -0.7 157,506 + -0.2 157,506 + +0.8 157,506 + -1.1 157,507 - +0.4 157,507 - +1.0 157,507 - +0.0 157,507 - -0.1 157,507 - -1.3 157,507 - +0.8 157,507 - +0.0 157,507 - -0.1 157,507 - +1.2 157,507 - +1.9 157,761 - +0.1 157,761 - -0.1 157,936 + GFF5527 0.31 -0.7 157,936 + GFF5527 0.31 +1.1 157,936 + GFF5527 0.31 +0.1 157,936 + GFF5527 0.31 -0.1 157,936 + GFF5527 0.31 +0.0 157,936 + GFF5527 0.31 +0.0 157,936 + GFF5527 0.31 -0.4 157,936 + GFF5527 0.31 +0.8 157,936 + GFF5527 0.31 -0.1 157,936 + GFF5527 0.31 -1.9 157,936 + GFF5527 0.31 +0.2 157,936 + GFF5527 0.31 +1.7 157,936 + GFF5527 0.31 -0.3 157,936 + GFF5527 0.31 -1.6 157,936 + GFF5527 0.31 -0.4 157,936 + GFF5527 0.31 -0.1 157,937 - GFF5527 0.31 -0.9 157,937 - GFF5527 0.31 -0.3 157,937 - GFF5527 0.31 +0.0 157,937 - GFF5527 0.31 -1.0 157,937 - GFF5527 0.31 -0.1 157,937 - GFF5527 0.31 -0.1 158,119 + GFF5527 0.66 -1.1 158,119 + GFF5527 0.66 -0.4 158,119 + GFF5527 0.66 -0.6 158,119 + GFF5527 0.66 +0.6 158,119 + GFF5527 0.66 -1.6 158,119 + GFF5527 0.66 +0.4 158,119 + GFF5527 0.66 -0.4 158,119 + GFF5527 0.66 -1.9 158,119 + GFF5527 0.66 -0.3 158,119 + GFF5527 0.66 -1.7 158,119 + GFF5527 0.66 -0.7 158,119 + GFF5527 0.66 +0.3 158,119 + GFF5527 0.66 +0.0 158,119 + GFF5527 0.66 +0.2 158,119 + GFF5527 0.66 -0.3 158,119 + GFF5527 0.66 +0.2 158,119 + GFF5527 0.66 -0.3 158,119 + GFF5527 0.66 +0.0 158,119 + GFF5527 0.66 +0.2 158,119 + GFF5527 0.66 -1.1 158,119 + GFF5527 0.66 -1.1 158,120 - GFF5527 0.66 -0.2 158,120 - GFF5527 0.66 +2.9 158,120 - GFF5527 0.66 +0.2 158,120 - GFF5527 0.66 +0.2 158,120 - GFF5527 0.66 +0.7 158,120 - GFF5527 0.66 -0.4 158,120 - GFF5527 0.66 -0.1 158,120 - GFF5527 0.66 -0.0 158,120 - GFF5527 0.66 -0.1 158,120 - GFF5527 0.66 +0.5 158,120 - GFF5527 0.66 -0.4 158,120 - GFF5527 0.66 +0.7 158,120 - GFF5527 0.66 -0.1 158,120 - GFF5527 0.66 +0.2 158,120 - GFF5527 0.66 -0.7 158,120 - GFF5527 0.66 -0.3 158,120 - GFF5527 0.66 +0.3 158,120 - GFF5527 0.66 -0.7 158,120 - GFF5527 0.66 -0.3 158,120 - GFF5527 0.66 -0.1 158,120 - GFF5527 0.66 -0.1 158,266 - +0.5 158,290 + -0.3 158,290 + -0.1 158,593 + GFF5528 0.57 +0.0 158,593 + GFF5528 0.57 -1.1 158,593 + GFF5528 0.57 +0.1 158,593 + GFF5528 0.57 +1.0 158,593 + GFF5528 0.57 -0.6 158,593 + GFF5528 0.57 +0.2 158,593 + GFF5528 0.57 +0.4 158,593 + GFF5528 0.57 -0.4 158,593 + GFF5528 0.57 +1.1 158,593 + GFF5528 0.57 +0.3 158,593 + GFF5528 0.57 +0.4 158,594 - GFF5528 0.57 +1.0 158,594 - GFF5528 0.57 +0.5 158,594 - GFF5528 0.57 +0.1 158,779 + -0.1 158,779 + +1.4 158,779 + +0.1 158,779 + -0.1 158,779 + +1.1 158,780 - -1.4 158,780 - +0.0 158,780 - -0.9 158,780 - +0.9 158,780 - -0.1 159,012 + GFF5529 0.27 +1.3 159,012 + GFF5529 0.27 -0.2 159,012 + GFF5529 0.27 -0.6 159,012 + GFF5529 0.27 -1.8 159,012 + GFF5529 0.27 +0.4 159,012 + GFF5529 0.27 -0.2 159,012 + GFF5529 0.27 -0.7 159,012 + GFF5529 0.27 +0.5 159,013 - GFF5529 0.27 +0.5 159,013 - GFF5529 0.27 +0.0 159,013 - GFF5529 0.27 -2.1 159,013 - GFF5529 0.27 -2.2 159,013 - GFF5529 0.27 +0.2 159,013 - GFF5529 0.27 +0.0 159,024 + GFF5529 0.28 -2.1 159,045 + GFF5529 0.31 -0.4 159,045 + GFF5529 0.31 -0.3 159,045 + GFF5529 0.31 +0.5 159,045 + GFF5529 0.31 -0.3 159,045 + GFF5529 0.31 +2.6 159,045 + GFF5529 0.31 -0.0 159,045 + GFF5529 0.31 -0.1 159,045 + GFF5529 0.31 +0.8 159,045 + GFF5529 0.31 -0.6 159,046 - GFF5529 0.31 +0.8 159,046 - GFF5529 0.31 -0.3 159,117 + GFF5529 0.40 +0.4 159,117 + GFF5529 0.40 -1.0 159,117 + GFF5529 0.40 +0.5 159,118 - GFF5529 0.40 +0.5 159,163 - GFF5529 0.46 -0.4 159,264 + GFF5529 0.58 -0.8 159,264 + GFF5529 0.58 -1.0 159,264 + GFF5529 0.58 -1.9 159,264 + GFF5529 0.58 -1.6 159,265 - GFF5529 0.58 -0.2 159,265 - GFF5529 0.58 -1.9 159,265 - GFF5529 0.58 -0.4 159,279 + GFF5529 0.60 -1.1 159,279 + GFF5529 0.60 -1.5 159,279 + GFF5529 0.60 +0.2 159,279 + GFF5529 0.60 +1.1 159,279 + GFF5529 0.60 -0.1 159,279 + GFF5529 0.60 +0.6 159,279 + GFF5529 0.60 +0.3 159,279 + GFF5529 0.60 -0.8 159,280 - GFF5529 0.60 +0.2 159,280 - GFF5529 0.60 -0.8 159,297 + GFF5529 0.62 -1.2 159,297 + GFF5529 0.62 -1.7 159,297 + GFF5529 0.62 -0.1 159,297 + GFF5529 0.62 +0.4 159,298 - GFF5529 0.62 -0.8 159,298 - GFF5529 0.62 -0.3 159,298 - GFF5529 0.62 -0.6 159,298 - GFF5529 0.62 +0.3 159,298 - GFF5529 0.62 -0.7 159,298 - GFF5529 0.62 -0.3 159,298 - GFF5529 0.62 -1.4 159,402 + GFF5529 0.75 -0.2 159,402 + GFF5529 0.75 +0.1 159,402 + GFF5529 0.75 +0.6 159,424 + GFF5529 0.78 -1.7 159,424 + GFF5529 0.78 -0.5 159,425 - GFF5529 0.78 +2.3
Or see this region's nucleotide sequence