Strain Fitness in Variovorax sp. SCN45 around GFF5396

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5394 and GFF5395 are separated by 32 nucleotidesGFF5395 and GFF5396 overlap by 17 nucleotidesGFF5396 and GFF5397 are separated by 16 nucleotidesGFF5397 and GFF5398 are separated by 47 nucleotides GFF5394 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 19,721 to 20,548 GFF5394 GFF5395 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 20,581 to 21,309 GFF5395 GFF5396 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,293 to 21,949 GFF5396 GFF5397 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 21,966 to 22,649 GFF5397 GFF5398 - L-fuconate dehydratase (EC 4.2.1.68), type 2, at 22,697 to 23,929 GFF5398 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 20.380 kb on - strand, within GFF5394at 20.380 kb on - strand, within GFF5394at 20.380 kb on - strand, within GFF5394at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.678 kb on + strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 20.679 kb on - strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.044 kb on + strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.045 kb on - strand, within GFF5395at 21.366 kb on + strand, within GFF5396at 21.366 kb on + strand, within GFF5396at 21.366 kb on + strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.367 kb on - strand, within GFF5396at 21.390 kb on + strand, within GFF5396at 21.390 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.435 kb on + strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.436 kb on - strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.663 kb on + strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.664 kb on - strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.752 kb on + strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.753 kb on - strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.786 kb on + strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 21.787 kb on - strand, within GFF5396at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.042 kb on + strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.043 kb on - strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.053 kb on + strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.054 kb on - strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.057 kb on + strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.058 kb on - strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.209 kb on + strand, within GFF5397at 22.210 kb on - strand, within GFF5397at 22.339 kb on + strand, within GFF5397at 22.339 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.429 kb on + strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.430 kb on - strand, within GFF5397at 22.471 kb on + strand, within GFF5397at 22.472 kb on - strand, within GFF5397at 22.472 kb on - strand, within GFF5397at 22.642 kb on + strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.643 kb on - strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.752 kb on + strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.753 kb on - strandat 22.917 kb on + strand, within GFF5398at 22.918 kb on - strand, within GFF5398at 22.918 kb on - strand, within GFF5398

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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20,380 - GFF5394 0.80 -0.8
20,380 - GFF5394 0.80 -0.4
20,380 - GFF5394 0.80 +0.0
20,678 + GFF5395 0.13 -0.1
20,678 + GFF5395 0.13 -0.2
20,678 + GFF5395 0.13 -0.6
20,678 + GFF5395 0.13 -0.5
20,678 + GFF5395 0.13 +1.3
20,678 + GFF5395 0.13 +1.2
20,678 + GFF5395 0.13 -0.4
20,678 + GFF5395 0.13 +0.1
20,678 + GFF5395 0.13 -0.7
20,678 + GFF5395 0.13 -0.3
20,678 + GFF5395 0.13 +0.5
20,678 + GFF5395 0.13 -1.6
20,678 + GFF5395 0.13 -1.6
20,678 + GFF5395 0.13 +0.1
20,678 + GFF5395 0.13 -1.8
20,679 - GFF5395 0.13 +0.9
20,679 - GFF5395 0.13 -0.4
20,679 - GFF5395 0.13 -1.2
20,679 - GFF5395 0.13 +0.4
20,679 - GFF5395 0.13 -0.6
20,679 - GFF5395 0.13 -0.3
20,679 - GFF5395 0.13 -1.3
20,679 - GFF5395 0.13 -1.2
20,679 - GFF5395 0.13 -0.3
20,679 - GFF5395 0.13 -0.1
20,679 - GFF5395 0.13 +0.5
20,679 - GFF5395 0.13 -1.5
20,679 - GFF5395 0.13 +2.5
20,679 - GFF5395 0.13 -0.9
21,044 + GFF5395 0.64 +0.1
21,044 + GFF5395 0.64 +0.7
21,044 + GFF5395 0.64 -0.9
21,044 + GFF5395 0.64 -1.9
21,044 + GFF5395 0.64 -1.0
21,044 + GFF5395 0.64 -0.2
21,044 + GFF5395 0.64 +0.0
21,044 + GFF5395 0.64 -0.1
21,045 - GFF5395 0.64 -0.6
21,045 - GFF5395 0.64 +0.5
21,045 - GFF5395 0.64 -0.1
21,045 - GFF5395 0.64 -0.4
21,045 - GFF5395 0.64 -0.5
21,045 - GFF5395 0.64 +0.4
21,045 - GFF5395 0.64 -0.6
21,045 - GFF5395 0.64 -0.4
21,366 + GFF5396 0.11 +1.3
21,366 + GFF5396 0.11 -0.4
21,366 + GFF5396 0.11 +0.3
21,367 - GFF5396 0.11 -0.6
21,367 - GFF5396 0.11 +0.6
21,367 - GFF5396 0.11 +0.1
21,390 + GFF5396 0.15 -1.6
21,390 + GFF5396 0.15 -0.6
21,435 + GFF5396 0.22 +1.4
21,435 + GFF5396 0.22 -0.2
21,435 + GFF5396 0.22 +0.9
21,435 + GFF5396 0.22 -0.1
21,435 + GFF5396 0.22 -0.0
21,435 + GFF5396 0.22 -0.3
21,435 + GFF5396 0.22 +1.2
21,436 - GFF5396 0.22 -0.9
21,436 - GFF5396 0.22 -0.2
21,436 - GFF5396 0.22 +0.0
21,663 + GFF5396 0.56 -0.2
21,663 + GFF5396 0.56 -0.3
21,663 + GFF5396 0.56 +0.1
21,663 + GFF5396 0.56 +0.3
21,663 + GFF5396 0.56 -0.8
21,663 + GFF5396 0.56 -0.2
21,663 + GFF5396 0.56 -0.6
21,663 + GFF5396 0.56 +1.4
21,664 - GFF5396 0.56 -1.1
21,664 - GFF5396 0.56 +0.7
21,664 - GFF5396 0.56 -1.1
21,752 + GFF5396 0.70 +0.3
21,752 + GFF5396 0.70 +0.2
21,752 + GFF5396 0.70 -0.8
21,753 - GFF5396 0.70 -0.3
21,753 - GFF5396 0.70 -0.1
21,786 + GFF5396 0.75 +0.5
21,786 + GFF5396 0.75 -0.9
21,787 - GFF5396 0.75 -0.4
21,787 - GFF5396 0.75 -1.1
22,042 + GFF5397 0.11 -2.4
22,042 + GFF5397 0.11 +1.2
22,042 + GFF5397 0.11 +0.4
22,043 - GFF5397 0.11 +0.5
22,043 - GFF5397 0.11 +0.3
22,053 + GFF5397 0.13 -2.1
22,053 + GFF5397 0.13 +1.6
22,053 + GFF5397 0.13 -0.0
22,053 + GFF5397 0.13 +0.2
22,054 - GFF5397 0.13 +1.9
22,054 - GFF5397 0.13 +0.2
22,054 - GFF5397 0.13 +0.7
22,054 - GFF5397 0.13 -2.2
22,054 - GFF5397 0.13 +0.1
22,057 + GFF5397 0.13 +0.6
22,057 + GFF5397 0.13 -0.4
22,057 + GFF5397 0.13 -0.5
22,057 + GFF5397 0.13 -1.0
22,057 + GFF5397 0.13 +0.9
22,057 + GFF5397 0.13 +0.3
22,057 + GFF5397 0.13 -0.4
22,057 + GFF5397 0.13 +1.8
22,058 - GFF5397 0.13 +1.9
22,058 - GFF5397 0.13 -0.2
22,058 - GFF5397 0.13 -0.6
22,058 - GFF5397 0.13 -0.4
22,058 - GFF5397 0.13 -0.4
22,058 - GFF5397 0.13 -0.8
22,058 - GFF5397 0.13 -1.6
22,058 - GFF5397 0.13 -0.4
22,058 - GFF5397 0.13 -1.5
22,058 - GFF5397 0.13 -0.8
22,058 - GFF5397 0.13 +0.8
22,209 + GFF5397 0.36 -0.3
22,209 + GFF5397 0.36 -0.6
22,209 + GFF5397 0.36 -0.3
22,209 + GFF5397 0.36 -1.3
22,209 + GFF5397 0.36 +1.4
22,209 + GFF5397 0.36 -0.4
22,209 + GFF5397 0.36 -0.1
22,210 - GFF5397 0.36 -1.1
22,339 + GFF5397 0.55 -1.0
22,339 + GFF5397 0.55 +0.5
22,429 + GFF5397 0.68 -0.5
22,429 + GFF5397 0.68 +1.0
22,429 + GFF5397 0.68 +0.1
22,429 + GFF5397 0.68 -0.2
22,429 + GFF5397 0.68 +0.4
22,429 + GFF5397 0.68 +0.8
22,429 + GFF5397 0.68 -0.1
22,429 + GFF5397 0.68 +0.2
22,429 + GFF5397 0.68 +0.1
22,430 - GFF5397 0.68 -1.5
22,430 - GFF5397 0.68 +0.3
22,430 - GFF5397 0.68 -0.5
22,430 - GFF5397 0.68 +1.7
22,430 - GFF5397 0.68 -1.3
22,430 - GFF5397 0.68 -0.5
22,430 - GFF5397 0.68 -1.7
22,430 - GFF5397 0.68 +0.0
22,471 + GFF5397 0.74 -0.4
22,472 - GFF5397 0.74 -0.4
22,472 - GFF5397 0.74 -0.6
22,642 + +0.5
22,643 - +1.3
22,643 - -2.0
22,643 - -0.2
22,643 - -0.1
22,752 + -0.7
22,752 + +0.2
22,752 + +0.2
22,752 + +1.7
22,752 + +1.0
22,752 + -0.6
22,752 + -1.0
22,752 + -0.9
22,752 + -1.4
22,752 + +0.3
22,752 + +0.4
22,753 - +0.1
22,753 - -0.1
22,753 - +0.2
22,753 - -0.4
22,753 - -0.2
22,753 - -0.1
22,753 - -0.6
22,753 - +1.9
22,753 - -0.9
22,753 - -0.1
22,753 - -0.1
22,917 + GFF5398 0.18 -0.0
22,918 - GFF5398 0.18 -0.5
22,918 - GFF5398 0.18 +0.2

Or see this region's nucleotide sequence