Strain Fitness in Variovorax sp. SCN45 around GFF5291

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5289 and GFF5290 are separated by 137 nucleotidesGFF5290 and GFF5291 are separated by 208 nucleotidesGFF5291 and GFF5292 are separated by 6 nucleotidesGFF5292 and GFF5293 are separated by 23 nucleotides GFF5289 - hypothetical protein, at 160,669 to 161,424 GFF5289 GFF5290 - hypothetical protein, at 161,562 to 161,909 GFF5290 GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268 GFF5291 GFF5292 - no description, at 164,275 to 164,778 GFF5292 GFF5293 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 164,802 to 166,052 GFF5293 Position (kb) 162 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 161.351 kb on + strandat 161.352 kb on - strandat 161.584 kb on + strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.585 kb on - strandat 161.677 kb on - strand, within GFF5290at 161.677 kb on - strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.727 kb on + strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.728 kb on - strand, within GFF5290at 161.920 kb on + strandat 161.921 kb on - strandat 161.924 kb on - strandat 161.924 kb on - strandat 162.012 kb on - strandat 162.027 kb on + strandat 162.027 kb on + strandat 162.028 kb on - strandat 162.040 kb on + strandat 162.040 kb on + strandat 162.040 kb on + strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.041 kb on - strandat 162.074 kb on - strandat 162.258 kb on + strandat 162.258 kb on + strandat 162.258 kb on + strandat 162.259 kb on - strandat 162.259 kb on - strandat 162.517 kb on + strand, within GFF5291at 162.517 kb on + strand, within GFF5291at 162.517 kb on + strand, within GFF5291at 162.518 kb on - strand, within GFF5291at 162.520 kb on + strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.521 kb on - strand, within GFF5291at 162.533 kb on - strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.673 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.748 kb on + strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.749 kb on - strand, within GFF5291at 162.766 kb on + strand, within GFF5291at 162.767 kb on - strand, within GFF5291at 162.767 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.854 kb on - strand, within GFF5291at 162.877 kb on - strand, within GFF5291at 163.066 kb on + strand, within GFF5291at 163.066 kb on + strand, within GFF5291at 163.066 kb on + strand, within GFF5291at 163.066 kb on + strand, within GFF5291at 163.066 kb on + strand, within GFF5291at 163.067 kb on - strand, within GFF5291at 163.067 kb on - strand, within GFF5291at 163.067 kb on - strand, within GFF5291at 163.126 kb on + strand, within GFF5291at 163.126 kb on + strand, within GFF5291at 163.126 kb on + strand, within GFF5291at 163.126 kb on + strand, within GFF5291at 163.126 kb on + strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.127 kb on - strand, within GFF5291at 163.267 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.393 kb on + strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.394 kb on - strand, within GFF5291at 163.450 kb on + strand, within GFF5291at 163.451 kb on - strand, within GFF5291at 163.451 kb on - strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.543 kb on + strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.544 kb on - strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.570 kb on + strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.580 kb on - strand, within GFF5291at 163.591 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.669 kb on + strand, within GFF5291at 163.726 kb on + strand, within GFF5291at 163.727 kb on - strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.873 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.879 kb on + strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.880 kb on - strand, within GFF5291at 163.979 kb on - strand, within GFF5291at 163.979 kb on - strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.035 kb on + strand, within GFF5291at 164.036 kb on - strand, within GFF5291at 164.036 kb on - strand, within GFF5291at 164.098 kb on + strandat 164.185 kb on + strandat 164.311 kb on + strandat 164.311 kb on + strandat 164.312 kb on - strandat 164.312 kb on - strandat 164.458 kb on + strand, within GFF5292at 164.459 kb on - strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.518 kb on + strand, within GFF5292at 164.519 kb on - strand, within GFF5292at 164.519 kb on - strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.584 kb on + strand, within GFF5292at 164.972 kb on + strand, within GFF5293at 164.972 kb on + strand, within GFF5293

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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161,351 + +0.1
161,352 - +1.0
161,584 + +0.3
161,585 - +1.0
161,585 - -0.4
161,585 - +0.7
161,585 - +0.6
161,677 - GFF5290 0.33 +0.2
161,677 - GFF5290 0.33 -0.6
161,727 + GFF5290 0.47 -0.0
161,727 + GFF5290 0.47 +0.6
161,727 + GFF5290 0.47 -0.9
161,727 + GFF5290 0.47 -0.5
161,728 - GFF5290 0.48 -0.1
161,728 - GFF5290 0.48 +0.2
161,728 - GFF5290 0.48 -1.7
161,728 - GFF5290 0.48 +0.7
161,920 + +0.7
161,921 - -0.2
161,924 - -0.7
161,924 - -0.3
162,012 - -0.3
162,027 + +0.1
162,027 + +0.1
162,028 - +0.5
162,040 + +1.2
162,040 + -1.7
162,040 + +0.8
162,041 - -0.2
162,041 - -1.4
162,041 - -0.1
162,041 - +0.2
162,074 - +0.2
162,258 + -1.1
162,258 + +0.5
162,258 + -0.4
162,259 - -1.2
162,259 - -1.5
162,517 + GFF5291 0.19 -0.2
162,517 + GFF5291 0.19 +0.4
162,517 + GFF5291 0.19 +0.4
162,518 - GFF5291 0.19 +0.5
162,520 + GFF5291 0.19 -0.3
162,521 - GFF5291 0.19 +0.2
162,521 - GFF5291 0.19 -0.5
162,521 - GFF5291 0.19 +0.1
162,533 - GFF5291 0.19 -0.3
162,673 + GFF5291 0.26 +1.0
162,673 + GFF5291 0.26 +0.4
162,673 + GFF5291 0.26 -1.2
162,748 + GFF5291 0.29 +0.0
162,748 + GFF5291 0.29 -0.7
162,748 + GFF5291 0.29 +0.3
162,748 + GFF5291 0.29 -0.5
162,749 - GFF5291 0.29 +1.5
162,749 - GFF5291 0.29 -0.0
162,749 - GFF5291 0.29 +0.3
162,749 - GFF5291 0.29 +0.5
162,749 - GFF5291 0.29 +0.0
162,749 - GFF5291 0.29 +0.2
162,766 + GFF5291 0.30 -2.0
162,767 - GFF5291 0.30 +0.3
162,767 - GFF5291 0.30 -0.2
162,854 - GFF5291 0.34 +0.5
162,854 - GFF5291 0.34 -0.2
162,854 - GFF5291 0.34 +0.8
162,877 - GFF5291 0.35 -1.1
163,066 + GFF5291 0.44 -0.5
163,066 + GFF5291 0.44 -0.5
163,066 + GFF5291 0.44 -0.2
163,066 + GFF5291 0.44 +0.5
163,066 + GFF5291 0.44 -1.9
163,067 - GFF5291 0.44 +0.8
163,067 - GFF5291 0.44 +0.3
163,067 - GFF5291 0.44 -0.2
163,126 + GFF5291 0.47 +0.6
163,126 + GFF5291 0.47 +0.8
163,126 + GFF5291 0.47 +0.1
163,126 + GFF5291 0.47 +1.5
163,126 + GFF5291 0.47 +0.1
163,127 - GFF5291 0.47 +0.3
163,127 - GFF5291 0.47 -0.6
163,127 - GFF5291 0.47 -0.3
163,127 - GFF5291 0.47 +1.0
163,127 - GFF5291 0.47 -2.0
163,127 - GFF5291 0.47 -1.5
163,267 + GFF5291 0.53 +0.6
163,393 + GFF5291 0.59 -1.2
163,393 + GFF5291 0.59 -0.2
163,393 + GFF5291 0.59 +0.1
163,393 + GFF5291 0.59 +0.1
163,394 - GFF5291 0.59 +0.9
163,394 - GFF5291 0.59 -0.5
163,394 - GFF5291 0.59 +1.0
163,394 - GFF5291 0.59 -1.1
163,394 - GFF5291 0.59 +0.3
163,450 + GFF5291 0.62 -0.0
163,451 - GFF5291 0.62 +0.7
163,451 - GFF5291 0.62 -1.2
163,543 + GFF5291 0.66 -0.7
163,543 + GFF5291 0.66 +1.6
163,543 + GFF5291 0.66 +0.8
163,544 - GFF5291 0.66 +0.2
163,544 - GFF5291 0.66 -0.6
163,544 - GFF5291 0.66 -0.7
163,544 - GFF5291 0.66 +0.3
163,544 - GFF5291 0.66 +1.0
163,570 + GFF5291 0.68 -0.7
163,570 + GFF5291 0.68 -1.0
163,570 + GFF5291 0.68 +0.8
163,580 - GFF5291 0.68 -0.7
163,580 - GFF5291 0.68 +0.0
163,580 - GFF5291 0.68 +0.2
163,580 - GFF5291 0.68 -0.3
163,580 - GFF5291 0.68 +0.2
163,580 - GFF5291 0.68 +0.3
163,591 + GFF5291 0.68 -2.4
163,669 + GFF5291 0.72 +0.1
163,669 + GFF5291 0.72 -0.5
163,669 + GFF5291 0.72 +0.0
163,726 + GFF5291 0.75 +0.2
163,727 - GFF5291 0.75 -0.0
163,873 + GFF5291 0.82 +0.7
163,873 + GFF5291 0.82 -0.7
163,873 + GFF5291 0.82 +0.6
163,879 + GFF5291 0.82 +0.4
163,879 + GFF5291 0.82 -0.0
163,879 + GFF5291 0.82 -0.5
163,879 + GFF5291 0.82 +0.5
163,880 - GFF5291 0.82 +1.0
163,880 - GFF5291 0.82 -1.3
163,880 - GFF5291 0.82 +0.3
163,979 - GFF5291 0.87 -0.2
163,979 - GFF5291 0.87 +1.3
164,035 + GFF5291 0.89 -0.0
164,035 + GFF5291 0.89 +0.4
164,035 + GFF5291 0.89 +0.1
164,035 + GFF5291 0.89 -1.7
164,035 + GFF5291 0.89 +1.8
164,036 - GFF5291 0.89 -1.2
164,036 - GFF5291 0.89 -0.7
164,098 + +0.1
164,185 + -0.8
164,311 + -1.3
164,311 + +0.3
164,312 - +0.2
164,312 - -0.7
164,458 + GFF5292 0.36 +1.0
164,459 - GFF5292 0.37 +0.1
164,518 + GFF5292 0.48 -0.0
164,518 + GFF5292 0.48 +0.3
164,518 + GFF5292 0.48 +2.6
164,518 + GFF5292 0.48 -2.5
164,519 - GFF5292 0.48 +1.0
164,519 - GFF5292 0.48 -0.1
164,584 + GFF5292 0.61 +0.8
164,584 + GFF5292 0.61 -0.0
164,584 + GFF5292 0.61 -0.0
164,972 + GFF5293 0.14 -0.6
164,972 + GFF5293 0.14 +0.8

Or see this region's nucleotide sequence