Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5283 and GFF5284 are separated by 254 nucleotides GFF5284 and GFF5285 overlap by 1 nucleotides GFF5285 and GFF5286 are separated by 122 nucleotides
GFF5283 - Heat shock protein 10 kDa family chaperone GroES, at 152,640 to 152,930
GFF5283
GFF5284 - RNA polymerase ECF-type sigma factor, at 153,185 to 153,694
GFF5284
GFF5285 - Fe2+-dicitrate sensor, membrane component, at 153,694 to 154,719
GFF5285
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.022 kb on - strand at 153.022 kb on - strand at 153.022 kb on - strand at 153.022 kb on - strand at 153.045 kb on - strand at 153.045 kb on - strand at 153.050 kb on + strand at 153.051 kb on - strand at 153.141 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.233 kb on + strand at 153.234 kb on - strand at 153.374 kb on + strand, within GFF5284 at 153.374 kb on + strand, within GFF5284 at 153.374 kb on + strand, within GFF5284 at 153.375 kb on - strand, within GFF5284 at 153.375 kb on - strand, within GFF5284 at 153.375 kb on - strand, within GFF5284 at 153.440 kb on + strand, within GFF5284 at 153.440 kb on + strand, within GFF5284 at 153.441 kb on - strand, within GFF5284 at 153.599 kb on + strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.600 kb on - strand, within GFF5284 at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.650 kb on + strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.651 kb on - strand at 153.677 kb on + strand at 153.677 kb on + strand at 153.677 kb on + strand at 153.677 kb on + strand at 153.677 kb on + strand at 153.677 kb on + strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.678 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.072 kb on + strand, within GFF5285 at 154.073 kb on - strand, within GFF5285 at 154.556 kb on - strand, within GFF5285 at 154.709 kb on + strand at 154.709 kb on + strand at 154.777 kb on + strand at 154.791 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.984 kb on - strand at 154.984 kb on - strand at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.718 kb on + strand, within GFF5286 at 155.719 kb on - strand, within GFF5286
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 153,022 - -1.5 153,022 - -0.9 153,022 - +0.4 153,022 - -0.9 153,045 - +0.1 153,045 - -1.8 153,050 + +0.5 153,051 - -0.8 153,141 + -0.6 153,233 + +0.7 153,233 + +1.0 153,233 + -0.8 153,233 + +0.4 153,233 + -1.1 153,233 + +0.4 153,233 + -0.5 153,234 - -0.4 153,374 + GFF5284 0.37 +0.4 153,374 + GFF5284 0.37 +2.4 153,374 + GFF5284 0.37 +0.3 153,375 - GFF5284 0.37 +0.8 153,375 - GFF5284 0.37 +1.5 153,375 - GFF5284 0.37 +0.2 153,440 + GFF5284 0.50 -0.4 153,440 + GFF5284 0.50 +1.2 153,441 - GFF5284 0.50 -0.4 153,599 + GFF5284 0.81 +1.3 153,600 - GFF5284 0.81 -0.3 153,600 - GFF5284 0.81 +0.5 153,600 - GFF5284 0.81 +0.7 153,600 - GFF5284 0.81 -0.8 153,600 - GFF5284 0.81 -0.4 153,600 - GFF5284 0.81 +1.6 153,650 + -0.4 153,650 + +1.3 153,650 + -0.2 153,650 + +1.0 153,650 + -1.4 153,650 + +0.9 153,650 + -0.2 153,650 + -0.1 153,650 + +0.0 153,650 + +0.1 153,650 + -0.4 153,650 + +0.9 153,650 + -0.0 153,650 + -0.8 153,650 + +1.7 153,650 + +0.8 153,651 - -0.3 153,651 - +0.0 153,651 - -0.0 153,651 - -0.8 153,651 - -1.0 153,651 - -1.1 153,651 - +0.4 153,651 - +0.5 153,651 - -0.0 153,651 - -0.0 153,651 - +0.1 153,651 - +0.1 153,651 - +0.3 153,651 - -0.4 153,651 - +0.7 153,651 - -1.4 153,651 - -0.5 153,677 + -1.7 153,677 + -0.8 153,677 + -1.9 153,677 + +0.8 153,677 + -0.1 153,677 + +0.4 153,678 - -0.5 153,678 - +0.8 153,678 - -0.8 153,678 - -0.2 153,678 - -0.3 153,678 - -0.8 153,678 - +0.0 153,678 - -1.4 153,785 - -0.5 153,785 - -0.8 153,785 - -3.2 153,785 - -0.7 153,785 - -0.4 154,015 + GFF5285 0.31 -1.7 154,015 + GFF5285 0.31 -0.8 154,015 + GFF5285 0.31 -0.8 154,016 - GFF5285 0.31 -0.3 154,016 - GFF5285 0.31 +0.1 154,016 - GFF5285 0.31 -0.7 154,072 + GFF5285 0.37 +0.0 154,073 - GFF5285 0.37 -0.2 154,556 - GFF5285 0.84 -1.1 154,709 + +0.6 154,709 + -0.3 154,777 + -0.0 154,791 + -0.9 154,983 + +0.3 154,983 + -0.1 154,983 + -0.5 154,983 + -0.1 154,984 - -2.5 154,984 - -0.3 155,106 + GFF5286 0.11 -0.6 155,106 + GFF5286 0.11 +1.4 155,106 + GFF5286 0.11 -0.2 155,106 + GFF5286 0.11 -0.8 155,107 - GFF5286 0.11 -0.2 155,107 - GFF5286 0.11 +0.1 155,107 - GFF5286 0.11 +0.1 155,107 - GFF5286 0.11 +0.3 155,107 - GFF5286 0.11 -1.0 155,107 - GFF5286 0.11 -0.5 155,107 - GFF5286 0.11 -1.5 155,107 - GFF5286 0.11 +1.0 155,107 - GFF5286 0.11 +2.3 155,107 - GFF5286 0.11 -1.3 155,625 + GFF5286 0.32 +0.3 155,625 + GFF5286 0.32 -0.0 155,625 + GFF5286 0.32 -0.2 155,718 + GFF5286 0.35 -1.9 155,719 - GFF5286 0.35 +0.3
Or see this region's nucleotide sequence