Strain Fitness in Variovorax sp. SCN45 around GFF5124

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5121 and GFF5122 are separated by 216 nucleotidesGFF5122 and GFF5123 are separated by 67 nucleotidesGFF5123 and GFF5124 are separated by 72 nucleotidesGFF5124 and GFF5125 are separated by 246 nucleotidesGFF5125 and GFF5126 are separated by 152 nucleotides GFF5121 - Probable signal peptide protein, at 222,758 to 223,624 GFF5121 GFF5122 - AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination, at 223,841 to 224,095 GFF5122 GFF5123 - no description, at 224,163 to 224,339 GFF5123 GFF5124 - Putative transposase InsK for insertion sequence element IS150, at 224,412 to 224,945 GFF5124 GFF5125 - no description, at 225,192 to 225,419 GFF5125 GFF5126 - hypothetical protein, at 225,572 to 226,885 GFF5126 Position (kb) 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 223.431 kb on + strand, within GFF5121at 223.431 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.476 kb on + strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.477 kb on - strand, within GFF5121at 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.696 kb on + strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 223.697 kb on - strandat 224.006 kb on - strand, within GFF5122at 224.129 kb on + strandat 224.129 kb on + strandat 224.129 kb on + strandat 224.129 kb on + strandat 224.130 kb on - strandat 224.130 kb on - strandat 224.192 kb on - strand, within GFF5123at 224.192 kb on - strand, within GFF5123at 224.240 kb on + strand, within GFF5123at 224.296 kb on - strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.304 kb on + strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.305 kb on - strand, within GFF5123at 224.337 kb on + strandat 224.337 kb on + strandat 224.337 kb on + strandat 224.338 kb on - strandat 224.338 kb on - strandat 224.338 kb on - strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.451 kb on + strandat 224.452 kb on - strandat 224.452 kb on - strandat 224.452 kb on - strandat 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.571 kb on + strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.572 kb on - strand, within GFF5124at 224.756 kb on + strand, within GFF5124at 224.756 kb on + strand, within GFF5124at 224.757 kb on - strand, within GFF5124at 224.844 kb on + strand, within GFF5124at 224.844 kb on + strand, within GFF5124at 224.866 kb on + strand, within GFF5124at 224.867 kb on - strand, within GFF5124at 224.867 kb on - strand, within GFF5124at 224.873 kb on - strand, within GFF5124at 224.880 kb on + strand, within GFF5124at 224.880 kb on + strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.881 kb on - strand, within GFF5124at 224.887 kb on + strand, within GFF5124at 224.888 kb on - strand, within GFF5124at 225.073 kb on - strandat 225.137 kb on + strandat 225.138 kb on - strandat 225.138 kb on - strandat 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.237 kb on + strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.238 kb on - strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.239 kb on + strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.240 kb on - strand, within GFF5125at 225.265 kb on + strand, within GFF5125at 225.265 kb on + strand, within GFF5125at 225.266 kb on - strand, within GFF5125at 225.266 kb on - strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.291 kb on + strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.292 kb on - strand, within GFF5125at 225.295 kb on + strand, within GFF5125at 225.295 kb on + strand, within GFF5125at 225.295 kb on + strand, within GFF5125at 225.295 kb on + strand, within GFF5125at 225.296 kb on - strand, within GFF5125at 225.296 kb on - strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.301 kb on + strand, within GFF5125at 225.302 kb on - strand, within GFF5125at 225.302 kb on - strand, within GFF5125at 225.302 kb on - strand, within GFF5125at 225.302 kb on - strand, within GFF5125at 225.424 kb on + strandat 225.425 kb on - strandat 225.540 kb on + strandat 225.540 kb on + strandat 225.540 kb on + strandat 225.540 kb on + strandat 225.541 kb on - strandat 225.541 kb on - strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.569 kb on + strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.570 kb on - strandat 225.624 kb on - strandat 225.630 kb on - strandat 225.630 kb on - strandat 225.654 kb on - strandat 225.676 kb on + strandat 225.741 kb on - strand, within GFF5126at 225.741 kb on - strand, within GFF5126at 225.741 kb on - strand, within GFF5126at 225.741 kb on - strand, within GFF5126at 225.751 kb on + strand, within GFF5126at 225.751 kb on + strand, within GFF5126at 225.751 kb on + strand, within GFF5126at 225.752 kb on - strand, within GFF5126at 225.892 kb on + strand, within GFF5126at 225.892 kb on + strand, within GFF5126at 225.893 kb on - strand, within GFF5126at 225.893 kb on - strand, within GFF5126at 225.916 kb on + strand, within GFF5126

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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223,431 + GFF5121 0.78 -2.5
223,431 + GFF5121 0.78 -1.5
223,476 + GFF5121 0.83 -0.5
223,476 + GFF5121 0.83 +0.1
223,476 + GFF5121 0.83 -0.4
223,477 - GFF5121 0.83 +0.7
223,477 - GFF5121 0.83 -0.1
223,477 - GFF5121 0.83 +0.1
223,696 + +1.5
223,696 + +0.5
223,696 + -0.2
223,696 + -0.5
223,696 + -0.5
223,697 - +1.0
223,697 - +0.9
223,697 - +0.3
223,697 - -0.6
223,697 - -0.3
223,697 - +0.2
223,697 - -1.5
224,006 - GFF5122 0.65 +0.0
224,129 + -0.5
224,129 + +1.9
224,129 + -0.2
224,129 + -0.4
224,130 - -1.0
224,130 - -0.2
224,192 - GFF5123 0.16 +0.2
224,192 - GFF5123 0.16 -1.2
224,240 + GFF5123 0.44 -0.3
224,296 - GFF5123 0.75 +0.5
224,304 + GFF5123 0.80 -1.8
224,304 + GFF5123 0.80 -0.5
224,304 + GFF5123 0.80 -0.2
224,304 + GFF5123 0.80 -0.5
224,304 + GFF5123 0.80 +0.2
224,304 + GFF5123 0.80 -2.5
224,304 + GFF5123 0.80 -1.2
224,304 + GFF5123 0.80 -2.9
224,305 - GFF5123 0.80 -0.6
224,305 - GFF5123 0.80 -1.8
224,305 - GFF5123 0.80 -0.1
224,337 + -3.4
224,337 + -0.8
224,337 + -0.3
224,338 - -0.5
224,338 - +0.3
224,338 - -0.3
224,451 + +0.0
224,451 + -1.2
224,451 + +0.2
224,451 + +0.3
224,451 + +0.5
224,451 + -1.5
224,451 + +0.2
224,451 + -1.7
224,451 + +2.3
224,452 - +0.2
224,452 - +1.9
224,452 - -0.1
224,571 + GFF5124 0.30 +0.5
224,571 + GFF5124 0.30 -0.7
224,571 + GFF5124 0.30 -0.3
224,571 + GFF5124 0.30 +0.5
224,571 + GFF5124 0.30 +0.9
224,571 + GFF5124 0.30 +0.2
224,571 + GFF5124 0.30 -0.8
224,571 + GFF5124 0.30 -0.2
224,571 + GFF5124 0.30 -0.1
224,571 + GFF5124 0.30 -0.1
224,571 + GFF5124 0.30 -0.5
224,572 - GFF5124 0.30 +0.2
224,572 - GFF5124 0.30 -0.9
224,572 - GFF5124 0.30 -0.4
224,572 - GFF5124 0.30 -1.3
224,756 + GFF5124 0.64 +0.4
224,756 + GFF5124 0.64 -0.4
224,757 - GFF5124 0.65 -0.7
224,844 + GFF5124 0.81 -0.3
224,844 + GFF5124 0.81 -0.4
224,866 + GFF5124 0.85 -0.1
224,867 - GFF5124 0.85 -0.6
224,867 - GFF5124 0.85 -0.2
224,873 - GFF5124 0.86 -0.5
224,880 + GFF5124 0.88 +0.8
224,880 + GFF5124 0.88 -0.4
224,881 - GFF5124 0.88 -0.1
224,881 - GFF5124 0.88 +1.1
224,881 - GFF5124 0.88 -0.9
224,881 - GFF5124 0.88 +0.5
224,881 - GFF5124 0.88 +0.5
224,887 + GFF5124 0.89 +0.3
224,888 - GFF5124 0.89 +1.1
225,073 - +0.9
225,137 + -0.2
225,138 - +0.2
225,138 - -1.3
225,237 + GFF5125 0.20 -0.3
225,237 + GFF5125 0.20 -0.3
225,237 + GFF5125 0.20 -1.1
225,237 + GFF5125 0.20 -0.3
225,237 + GFF5125 0.20 +0.5
225,237 + GFF5125 0.20 -1.3
225,237 + GFF5125 0.20 -0.8
225,237 + GFF5125 0.20 -3.0
225,237 + GFF5125 0.20 -0.9
225,237 + GFF5125 0.20 +0.3
225,237 + GFF5125 0.20 +0.5
225,237 + GFF5125 0.20 +0.8
225,237 + GFF5125 0.20 -0.0
225,237 + GFF5125 0.20 +0.4
225,237 + GFF5125 0.20 +0.0
225,237 + GFF5125 0.20 -0.6
225,237 + GFF5125 0.20 +1.1
225,237 + GFF5125 0.20 -0.7
225,237 + GFF5125 0.20 -0.4
225,237 + GFF5125 0.20 -0.5
225,238 - GFF5125 0.20 -1.3
225,238 - GFF5125 0.20 -1.6
225,238 - GFF5125 0.20 -0.7
225,238 - GFF5125 0.20 +0.2
225,238 - GFF5125 0.20 +2.3
225,238 - GFF5125 0.20 -0.8
225,238 - GFF5125 0.20 -1.0
225,238 - GFF5125 0.20 +0.2
225,238 - GFF5125 0.20 +0.3
225,238 - GFF5125 0.20 +0.7
225,238 - GFF5125 0.20 -0.8
225,238 - GFF5125 0.20 -1.2
225,238 - GFF5125 0.20 +1.9
225,238 - GFF5125 0.20 +0.1
225,238 - GFF5125 0.20 -0.4
225,238 - GFF5125 0.20 +1.1
225,238 - GFF5125 0.20 -0.1
225,239 + GFF5125 0.21 -0.3
225,239 + GFF5125 0.21 -0.8
225,239 + GFF5125 0.21 -0.9
225,239 + GFF5125 0.21 +0.3
225,239 + GFF5125 0.21 +0.8
225,239 + GFF5125 0.21 +0.6
225,239 + GFF5125 0.21 -0.6
225,240 - GFF5125 0.21 -1.1
225,240 - GFF5125 0.21 -0.5
225,240 - GFF5125 0.21 -0.4
225,240 - GFF5125 0.21 -0.4
225,240 - GFF5125 0.21 -0.8
225,240 - GFF5125 0.21 +0.0
225,265 + GFF5125 0.32 +0.0
225,265 + GFF5125 0.32 +1.3
225,266 - GFF5125 0.32 -1.9
225,266 - GFF5125 0.32 -1.6
225,291 + GFF5125 0.43 -0.5
225,291 + GFF5125 0.43 +0.1
225,291 + GFF5125 0.43 +0.1
225,291 + GFF5125 0.43 -1.7
225,291 + GFF5125 0.43 +0.3
225,291 + GFF5125 0.43 -0.5
225,291 + GFF5125 0.43 +0.4
225,292 - GFF5125 0.44 -0.2
225,292 - GFF5125 0.44 -0.6
225,292 - GFF5125 0.44 -0.5
225,292 - GFF5125 0.44 +0.5
225,292 - GFF5125 0.44 +0.6
225,292 - GFF5125 0.44 -0.2
225,295 + GFF5125 0.45 +0.4
225,295 + GFF5125 0.45 +0.5
225,295 + GFF5125 0.45 +1.0
225,295 + GFF5125 0.45 -0.5
225,296 - GFF5125 0.46 -0.4
225,296 - GFF5125 0.46 -1.2
225,301 + GFF5125 0.48 -0.3
225,301 + GFF5125 0.48 -0.9
225,301 + GFF5125 0.48 -0.3
225,301 + GFF5125 0.48 -1.5
225,301 + GFF5125 0.48 -0.2
225,301 + GFF5125 0.48 +1.5
225,302 - GFF5125 0.48 +0.3
225,302 - GFF5125 0.48 -0.9
225,302 - GFF5125 0.48 -1.1
225,302 - GFF5125 0.48 +0.2
225,424 + +0.2
225,425 - -1.3
225,540 + +0.2
225,540 + +0.2
225,540 + -0.1
225,540 + -0.6
225,541 - -0.6
225,541 - +1.4
225,569 + -0.0
225,569 + -0.1
225,569 + -0.2
225,569 + +0.3
225,569 + -0.4
225,569 + -0.8
225,569 + +0.2
225,569 + -1.5
225,570 - +0.2
225,570 - -0.7
225,570 - +1.2
225,570 - -0.1
225,570 - -0.8
225,570 - -0.7
225,570 - -1.9
225,570 - -0.2
225,570 - +0.1
225,570 - -1.3
225,624 - -1.6
225,630 - +0.5
225,630 - +0.5
225,654 - +0.5
225,676 + -0.9
225,741 - GFF5126 0.13 +0.3
225,741 - GFF5126 0.13 -0.7
225,741 - GFF5126 0.13 -1.6
225,741 - GFF5126 0.13 +1.3
225,751 + GFF5126 0.14 +1.1
225,751 + GFF5126 0.14 +0.3
225,751 + GFF5126 0.14 -0.5
225,752 - GFF5126 0.14 -0.5
225,892 + GFF5126 0.24 -2.1
225,892 + GFF5126 0.24 -0.1
225,893 - GFF5126 0.24 -1.9
225,893 - GFF5126 0.24 +0.3
225,916 + GFF5126 0.26 +0.5

Or see this region's nucleotide sequence