Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5038 and GFF5039 overlap by 4 nucleotides GFF5039 and GFF5040 are separated by 331 nucleotides GFF5040 and GFF5041 are separated by 78 nucleotides
GFF5038 - Tetracycline resistance, MFS efflux pump => Tet(C), at 138,541 to 139,773
GFF5038
GFF5039 - no description, at 139,770 to 140,144
GFF5039
GFF5040 - 3-hydroxypropionate dehydrogenase DddA, flavin-containing (EC 1.1.1.59), at 140,476 to 142,107
GFF5040
GFF5041 - Malonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.18), at 142,186 to 143,697
GFF5041
Position (kb) 140
141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 139.583 kb on + strand, within GFF5038 at 139.583 kb on + strand, within GFF5038 at 139.583 kb on + strand, within GFF5038 at 139.584 kb on - strand, within GFF5038 at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.754 kb on + strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.755 kb on - strand at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.813 kb on + strand, within GFF5039 at 139.968 kb on + strand, within GFF5039 at 139.968 kb on + strand, within GFF5039 at 140.263 kb on - strand at 140.263 kb on - strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.477 kb on + strand at 140.478 kb on - strand at 140.478 kb on - strand at 140.532 kb on + strand at 140.532 kb on + strand at 140.532 kb on + strand at 140.533 kb on - strand at 140.735 kb on + strand, within GFF5040 at 140.735 kb on + strand, within GFF5040 at 140.736 kb on - strand, within GFF5040 at 140.768 kb on + strand, within GFF5040 at 140.769 kb on - strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.855 kb on + strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 140.856 kb on - strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.011 kb on + strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.012 kb on - strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.107 kb on + strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.108 kb on - strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.182 kb on + strand, within GFF5040 at 141.482 kb on + strand, within GFF5040 at 141.482 kb on + strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.483 kb on - strand, within GFF5040 at 141.551 kb on + strand, within GFF5040 at 141.551 kb on + strand, within GFF5040 at 141.552 kb on - strand, within GFF5040 at 141.711 kb on - strand, within GFF5040 at 141.711 kb on - strand, within GFF5040 at 141.795 kb on - strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.818 kb on + strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.819 kb on - strand, within GFF5040 at 141.869 kb on + strand, within GFF5040 at 141.914 kb on + strand, within GFF5040 at 141.914 kb on + strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.915 kb on - strand, within GFF5040 at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.947 kb on + strand at 141.948 kb on - strand at 141.948 kb on - strand at 141.948 kb on - strand at 141.953 kb on + strand at 141.953 kb on + strand at 141.954 kb on - strand at 141.954 kb on - strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.980 kb on + strand at 141.981 kb on - strand at 141.981 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.187 kb on + strand at 142.188 kb on - strand at 142.188 kb on - strand at 142.188 kb on - strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.268 kb on + strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.292 kb on + strand at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.544 kb on + strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.545 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.689 kb on - strand, within GFF5041 at 142.992 kb on - strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.997 kb on + strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041 at 142.998 kb on - strand, within GFF5041
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 139,583 + GFF5038 0.85 -0.2 139,583 + GFF5038 0.85 -0.2 139,583 + GFF5038 0.85 +0.3 139,584 - GFF5038 0.85 -0.3 139,754 + -0.4 139,754 + +0.5 139,754 + +0.1 139,754 + +0.9 139,754 + +0.4 139,755 - +1.1 139,755 - -0.2 139,755 - +2.6 139,755 - -0.4 139,755 - +0.4 139,755 - -0.1 139,755 - -0.5 139,813 + GFF5039 0.11 -1.3 139,813 + GFF5039 0.11 +0.5 139,813 + GFF5039 0.11 +1.3 139,813 + GFF5039 0.11 -0.2 139,813 + GFF5039 0.11 -0.1 139,968 + GFF5039 0.53 +0.9 139,968 + GFF5039 0.53 -0.5 140,263 - +0.7 140,263 - -0.1 140,379 + -0.7 140,380 - +0.6 140,477 + +0.0 140,477 + -0.3 140,477 + +1.3 140,477 + +0.6 140,478 - +0.1 140,478 - -0.3 140,532 + -1.0 140,532 + -0.7 140,532 + -0.9 140,533 - -1.6 140,735 + GFF5040 0.16 -0.1 140,735 + GFF5040 0.16 -1.2 140,736 - GFF5040 0.16 +1.5 140,768 + GFF5040 0.18 -0.9 140,769 - GFF5040 0.18 -1.1 140,855 + GFF5040 0.23 -1.5 140,855 + GFF5040 0.23 -1.1 140,855 + GFF5040 0.23 -1.2 140,855 + GFF5040 0.23 -1.5 140,855 + GFF5040 0.23 -1.7 140,855 + GFF5040 0.23 -1.9 140,855 + GFF5040 0.23 +0.1 140,855 + GFF5040 0.23 -1.3 140,856 - GFF5040 0.23 -2.0 140,856 - GFF5040 0.23 -1.1 140,856 - GFF5040 0.23 -1.7 141,011 + GFF5040 0.33 -1.8 141,011 + GFF5040 0.33 -0.1 141,011 + GFF5040 0.33 -1.2 141,011 + GFF5040 0.33 -1.1 141,011 + GFF5040 0.33 -3.2 141,012 - GFF5040 0.33 +0.3 141,012 - GFF5040 0.33 -1.1 141,012 - GFF5040 0.33 -1.0 141,012 - GFF5040 0.33 -1.7 141,012 - GFF5040 0.33 -1.8 141,012 - GFF5040 0.33 -1.0 141,012 - GFF5040 0.33 -1.0 141,107 + GFF5040 0.39 -1.5 141,107 + GFF5040 0.39 -1.7 141,107 + GFF5040 0.39 -1.8 141,107 + GFF5040 0.39 +0.5 141,108 - GFF5040 0.39 -0.7 141,108 - GFF5040 0.39 -1.9 141,108 - GFF5040 0.39 -1.1 141,108 - GFF5040 0.39 +1.1 141,108 - GFF5040 0.39 -0.8 141,108 - GFF5040 0.39 -1.9 141,108 - GFF5040 0.39 -1.7 141,182 + GFF5040 0.43 +0.3 141,182 + GFF5040 0.43 -1.9 141,182 + GFF5040 0.43 +0.1 141,482 + GFF5040 0.62 -1.8 141,482 + GFF5040 0.62 -1.6 141,483 - GFF5040 0.62 -2.2 141,483 - GFF5040 0.62 -1.5 141,483 - GFF5040 0.62 -0.3 141,483 - GFF5040 0.62 -2.4 141,551 + GFF5040 0.66 -0.5 141,551 + GFF5040 0.66 -1.0 141,552 - GFF5040 0.66 -1.6 141,711 - GFF5040 0.76 -1.6 141,711 - GFF5040 0.76 +0.5 141,795 - GFF5040 0.81 -1.7 141,818 + GFF5040 0.82 -1.7 141,818 + GFF5040 0.82 -2.7 141,818 + GFF5040 0.82 -0.8 141,818 + GFF5040 0.82 -1.6 141,818 + GFF5040 0.82 -1.4 141,818 + GFF5040 0.82 -1.2 141,818 + GFF5040 0.82 -2.2 141,818 + GFF5040 0.82 -0.8 141,819 - GFF5040 0.82 -2.4 141,819 - GFF5040 0.82 -0.3 141,819 - GFF5040 0.82 -0.5 141,819 - GFF5040 0.82 -0.3 141,819 - GFF5040 0.82 +1.3 141,819 - GFF5040 0.82 +0.5 141,819 - GFF5040 0.82 +0.3 141,869 + GFF5040 0.85 +0.3 141,914 + GFF5040 0.88 -1.7 141,914 + GFF5040 0.88 +0.9 141,915 - GFF5040 0.88 -1.0 141,915 - GFF5040 0.88 -0.1 141,915 - GFF5040 0.88 -2.7 141,915 - GFF5040 0.88 -0.7 141,915 - GFF5040 0.88 -0.9 141,915 - GFF5040 0.88 -1.5 141,915 - GFF5040 0.88 -1.5 141,947 + -0.5 141,947 + -2.2 141,947 + -3.3 141,947 + +0.5 141,947 + -1.5 141,947 + -1.9 141,947 + -0.2 141,948 - -0.3 141,948 - -1.2 141,948 - -0.8 141,953 + -0.6 141,953 + +0.3 141,954 - -1.3 141,954 - -1.6 141,980 + -0.1 141,980 + -2.0 141,980 + +0.3 141,980 + -1.9 141,981 - -1.9 141,981 - +0.9 142,086 - -1.3 142,086 - -0.2 142,086 - +0.9 142,086 - -2.2 142,086 - -0.2 142,086 - -2.4 142,187 + +0.7 142,187 + +1.9 142,187 + +0.2 142,187 + -0.6 142,187 + +0.0 142,187 + -1.6 142,187 + -0.0 142,188 - -0.6 142,188 - -1.4 142,188 - -1.0 142,268 + -0.6 142,268 + -0.0 142,268 + +0.5 142,268 + +0.3 142,269 - -1.0 142,269 - +0.8 142,269 - -0.3 142,269 - +0.6 142,269 - +2.3 142,269 - +0.2 142,292 + +0.9 142,544 + GFF5041 0.24 +1.2 142,544 + GFF5041 0.24 -1.1 142,544 + GFF5041 0.24 +1.0 142,544 + GFF5041 0.24 -0.4 142,544 + GFF5041 0.24 +0.5 142,544 + GFF5041 0.24 -0.3 142,545 - GFF5041 0.24 +0.3 142,545 - GFF5041 0.24 -0.5 142,545 - GFF5041 0.24 -0.4 142,545 - GFF5041 0.24 +0.0 142,545 - GFF5041 0.24 -0.6 142,545 - GFF5041 0.24 -3.0 142,545 - GFF5041 0.24 -0.6 142,545 - GFF5041 0.24 -0.8 142,545 - GFF5041 0.24 -0.4 142,545 - GFF5041 0.24 +0.4 142,545 - GFF5041 0.24 +0.7 142,545 - GFF5041 0.24 -0.1 142,689 - GFF5041 0.33 -1.2 142,689 - GFF5041 0.33 +1.1 142,689 - GFF5041 0.33 +0.5 142,689 - GFF5041 0.33 +0.6 142,689 - GFF5041 0.33 +0.5 142,689 - GFF5041 0.33 +0.9 142,992 - GFF5041 0.53 +0.6 142,997 + GFF5041 0.54 +0.7 142,997 + GFF5041 0.54 +0.2 142,997 + GFF5041 0.54 +0.0 142,997 + GFF5041 0.54 -0.1 142,997 + GFF5041 0.54 +0.0 142,997 + GFF5041 0.54 -0.2 142,997 + GFF5041 0.54 +0.4 142,997 + GFF5041 0.54 +1.2 142,997 + GFF5041 0.54 +1.0 142,997 + GFF5041 0.54 -0.1 142,997 + GFF5041 0.54 +0.7 142,997 + GFF5041 0.54 -0.5 142,997 + GFF5041 0.54 -0.3 142,997 + GFF5041 0.54 +1.3 142,997 + GFF5041 0.54 +0.3 142,997 + GFF5041 0.54 +0.3 142,997 + GFF5041 0.54 -0.6 142,997 + GFF5041 0.54 +1.3 142,998 - GFF5041 0.54 -0.5 142,998 - GFF5041 0.54 +0.4 142,998 - GFF5041 0.54 +1.5 142,998 - GFF5041 0.54 -0.5 142,998 - GFF5041 0.54 -1.4 142,998 - GFF5041 0.54 +0.6 142,998 - GFF5041 0.54 -1.3 142,998 - GFF5041 0.54 +0.3 142,998 - GFF5041 0.54 +0.8 142,998 - GFF5041 0.54 -0.7 142,998 - GFF5041 0.54 +0.3 142,998 - GFF5041 0.54 -0.7 142,998 - GFF5041 0.54 -0.6 142,998 - GFF5041 0.54 -0.5 142,998 - GFF5041 0.54 -1.8
Or see this region's nucleotide sequence