Strain Fitness in Variovorax sp. SCN45 around GFF5003

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5002 and GFF5003 overlap by 11 nucleotidesGFF5003 and GFF5004 are separated by 7 nucleotides GFF5002 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 101,611 to 102,741 GFF5002 GFF5003 - FIG00348156: hypothetical protein, at 102,731 to 103,825 GFF5003 GFF5004 - N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14), at 103,833 to 105,035 GFF5004 Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.794 kb on + strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.795 kb on - strand, within GFF5002at 101.848 kb on + strand, within GFF5002at 101.849 kb on - strand, within GFF5002at 101.849 kb on - strand, within GFF5002at 101.917 kb on + strand, within GFF5002at 101.917 kb on + strand, within GFF5002at 101.917 kb on + strand, within GFF5002at 101.918 kb on - strand, within GFF5002at 101.918 kb on - strand, within GFF5002at 101.918 kb on - strand, within GFF5002at 101.918 kb on - strand, within GFF5002at 101.918 kb on - strand, within GFF5002at 102.052 kb on + strand, within GFF5002at 102.052 kb on + strand, within GFF5002at 102.052 kb on + strand, within GFF5002at 102.052 kb on + strand, within GFF5002at 102.053 kb on - strand, within GFF5002at 102.053 kb on - strand, within GFF5002at 102.136 kb on + strand, within GFF5002at 102.136 kb on + strand, within GFF5002at 102.137 kb on - strand, within GFF5002at 102.295 kb on + strand, within GFF5002at 102.295 kb on + strand, within GFF5002at 102.295 kb on + strand, within GFF5002at 102.295 kb on + strand, within GFF5002at 102.295 kb on + strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.296 kb on - strand, within GFF5002at 102.341 kb on - strand, within GFF5002at 102.448 kb on + strand, within GFF5002at 102.448 kb on + strand, within GFF5002at 102.448 kb on + strand, within GFF5002at 102.448 kb on + strand, within GFF5002at 102.448 kb on + strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.449 kb on - strand, within GFF5002at 102.541 kb on + strand, within GFF5002at 102.541 kb on + strand, within GFF5002at 102.541 kb on + strand, within GFF5002at 102.541 kb on + strand, within GFF5002at 102.541 kb on + strand, within GFF5002at 102.542 kb on - strand, within GFF5002at 102.542 kb on - strand, within GFF5002at 102.542 kb on - strand, within GFF5002at 102.542 kb on - strand, within GFF5002at 102.542 kb on - strand, within GFF5002at 102.814 kb on + strandat 102.815 kb on - strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.816 kb on + strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.817 kb on - strandat 102.939 kb on + strand, within GFF5003at 102.939 kb on + strand, within GFF5003at 102.940 kb on - strand, within GFF5003at 102.940 kb on - strand, within GFF5003at 102.960 kb on + strand, within GFF5003at 102.960 kb on + strand, within GFF5003at 102.961 kb on - strand, within GFF5003at 102.961 kb on - strand, within GFF5003at 102.961 kb on - strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.984 kb on + strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 102.985 kb on - strand, within GFF5003at 103.038 kb on + strand, within GFF5003at 103.038 kb on + strand, within GFF5003at 103.038 kb on + strand, within GFF5003at 103.039 kb on - strand, within GFF5003at 103.043 kb on - strand, within GFF5003at 103.092 kb on + strand, within GFF5003at 103.093 kb on - strand, within GFF5003at 103.093 kb on - strand, within GFF5003at 103.278 kb on + strand, within GFF5003at 103.278 kb on + strand, within GFF5003at 103.279 kb on - strand, within GFF5003at 103.279 kb on - strand, within GFF5003at 103.305 kb on + strand, within GFF5003at 103.305 kb on + strand, within GFF5003at 103.407 kb on + strand, within GFF5003at 103.408 kb on - strand, within GFF5003at 103.491 kb on + strand, within GFF5003at 103.492 kb on - strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.524 kb on + strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.525 kb on - strand, within GFF5003at 103.791 kb on + strandat 103.792 kb on - strandat 103.792 kb on - strandat 103.792 kb on - strandat 103.924 kb on + strandat 103.924 kb on + strandat 103.924 kb on + strandat 103.925 kb on - strandat 103.925 kb on - strandat 103.925 kb on - strandat 103.925 kb on - strandat 103.925 kb on - strandat 103.925 kb on - strandat 104.005 kb on + strand, within GFF5004at 104.005 kb on + strand, within GFF5004at 104.005 kb on + strand, within GFF5004at 104.006 kb on - strand, within GFF5004at 104.036 kb on + strand, within GFF5004at 104.152 kb on + strand, within GFF5004at 104.152 kb on + strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.153 kb on - strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.155 kb on + strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.156 kb on - strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.653 kb on + strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004at 104.654 kb on - strand, within GFF5004

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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101,794 + GFF5002 0.16 +0.5
101,794 + GFF5002 0.16 -0.1
101,794 + GFF5002 0.16 -0.3
101,794 + GFF5002 0.16 +0.2
101,794 + GFF5002 0.16 -0.7
101,794 + GFF5002 0.16 -1.3
101,794 + GFF5002 0.16 -1.7
101,794 + GFF5002 0.16 -0.4
101,794 + GFF5002 0.16 +0.6
101,794 + GFF5002 0.16 -0.8
101,795 - GFF5002 0.16 -0.6
101,795 - GFF5002 0.16 -1.0
101,795 - GFF5002 0.16 +1.4
101,795 - GFF5002 0.16 +1.6
101,795 - GFF5002 0.16 -0.3
101,795 - GFF5002 0.16 +1.1
101,795 - GFF5002 0.16 -0.4
101,795 - GFF5002 0.16 +0.1
101,795 - GFF5002 0.16 -1.7
101,795 - GFF5002 0.16 +0.2
101,795 - GFF5002 0.16 -0.6
101,795 - GFF5002 0.16 +0.4
101,795 - GFF5002 0.16 +0.1
101,795 - GFF5002 0.16 +1.1
101,795 - GFF5002 0.16 -0.1
101,848 + GFF5002 0.21 -1.0
101,849 - GFF5002 0.21 -1.1
101,849 - GFF5002 0.21 -0.9
101,917 + GFF5002 0.27 -1.0
101,917 + GFF5002 0.27 -0.4
101,917 + GFF5002 0.27 -0.7
101,918 - GFF5002 0.27 +0.2
101,918 - GFF5002 0.27 -0.1
101,918 - GFF5002 0.27 -0.2
101,918 - GFF5002 0.27 +0.6
101,918 - GFF5002 0.27 +0.0
102,052 + GFF5002 0.39 +0.9
102,052 + GFF5002 0.39 -1.0
102,052 + GFF5002 0.39 -1.5
102,052 + GFF5002 0.39 +0.1
102,053 - GFF5002 0.39 +0.4
102,053 - GFF5002 0.39 -0.5
102,136 + GFF5002 0.46 -0.4
102,136 + GFF5002 0.46 +0.4
102,137 - GFF5002 0.47 +1.5
102,295 + GFF5002 0.60 -0.0
102,295 + GFF5002 0.60 -0.3
102,295 + GFF5002 0.60 +0.4
102,295 + GFF5002 0.60 -0.2
102,295 + GFF5002 0.60 -0.5
102,296 - GFF5002 0.61 -0.2
102,296 - GFF5002 0.61 -1.8
102,296 - GFF5002 0.61 +0.1
102,296 - GFF5002 0.61 -0.2
102,296 - GFF5002 0.61 +0.1
102,296 - GFF5002 0.61 -0.3
102,296 - GFF5002 0.61 -0.3
102,296 - GFF5002 0.61 +0.8
102,296 - GFF5002 0.61 +0.5
102,296 - GFF5002 0.61 -1.1
102,341 - GFF5002 0.65 +0.4
102,448 + GFF5002 0.74 -0.4
102,448 + GFF5002 0.74 +0.5
102,448 + GFF5002 0.74 +0.6
102,448 + GFF5002 0.74 -1.1
102,448 + GFF5002 0.74 -0.5
102,449 - GFF5002 0.74 -0.1
102,449 - GFF5002 0.74 -1.7
102,449 - GFF5002 0.74 -0.0
102,449 - GFF5002 0.74 -0.2
102,449 - GFF5002 0.74 -0.2
102,449 - GFF5002 0.74 +0.9
102,449 - GFF5002 0.74 +0.5
102,449 - GFF5002 0.74 -1.6
102,449 - GFF5002 0.74 -0.6
102,541 + GFF5002 0.82 +0.5
102,541 + GFF5002 0.82 -1.5
102,541 + GFF5002 0.82 -0.4
102,541 + GFF5002 0.82 -1.4
102,541 + GFF5002 0.82 -1.1
102,542 - GFF5002 0.82 +0.1
102,542 - GFF5002 0.82 -0.8
102,542 - GFF5002 0.82 -0.7
102,542 - GFF5002 0.82 +0.1
102,542 - GFF5002 0.82 -1.0
102,814 + -0.1
102,815 - +0.3
102,816 + -0.6
102,816 + -2.8
102,816 + +0.1
102,816 + -0.8
102,816 + -0.6
102,816 + +0.1
102,816 + +0.2
102,816 + -0.8
102,816 + -1.5
102,816 + -0.0
102,816 + -0.5
102,816 + +0.3
102,816 + -0.2
102,816 + +0.2
102,817 - -0.2
102,817 - -0.2
102,817 - +1.1
102,817 - -0.7
102,817 - -0.5
102,817 - +0.5
102,817 - -0.7
102,817 - +0.6
102,817 - -0.8
102,817 - -0.5
102,817 - -1.5
102,817 - -2.0
102,817 - +0.4
102,939 + GFF5003 0.19 -0.9
102,939 + GFF5003 0.19 +0.5
102,940 - GFF5003 0.19 -0.4
102,940 - GFF5003 0.19 +0.2
102,960 + GFF5003 0.21 -0.1
102,960 + GFF5003 0.21 -0.0
102,961 - GFF5003 0.21 +0.4
102,961 - GFF5003 0.21 +0.1
102,961 - GFF5003 0.21 -1.5
102,984 + GFF5003 0.23 -0.3
102,984 + GFF5003 0.23 -0.0
102,984 + GFF5003 0.23 +0.3
102,984 + GFF5003 0.23 -0.3
102,984 + GFF5003 0.23 -0.6
102,984 + GFF5003 0.23 +1.2
102,984 + GFF5003 0.23 -0.5
102,984 + GFF5003 0.23 -0.2
102,984 + GFF5003 0.23 +1.4
102,984 + GFF5003 0.23 -0.2
102,984 + GFF5003 0.23 -2.6
102,984 + GFF5003 0.23 -0.4
102,985 - GFF5003 0.23 -0.9
102,985 - GFF5003 0.23 -0.1
102,985 - GFF5003 0.23 -0.1
102,985 - GFF5003 0.23 +0.2
102,985 - GFF5003 0.23 -0.3
102,985 - GFF5003 0.23 +1.6
102,985 - GFF5003 0.23 +0.3
102,985 - GFF5003 0.23 +0.4
102,985 - GFF5003 0.23 +0.5
103,038 + GFF5003 0.28 +1.1
103,038 + GFF5003 0.28 +0.2
103,038 + GFF5003 0.28 +0.4
103,039 - GFF5003 0.28 -1.4
103,043 - GFF5003 0.28 +0.8
103,092 + GFF5003 0.33 -0.1
103,093 - GFF5003 0.33 -0.3
103,093 - GFF5003 0.33 -0.1
103,278 + GFF5003 0.50 +0.3
103,278 + GFF5003 0.50 -0.8
103,279 - GFF5003 0.50 -0.8
103,279 - GFF5003 0.50 +1.7
103,305 + GFF5003 0.52 -0.3
103,305 + GFF5003 0.52 -1.5
103,407 + GFF5003 0.62 +0.8
103,408 - GFF5003 0.62 +0.4
103,491 + GFF5003 0.69 +0.2
103,492 - GFF5003 0.69 +0.4
103,524 + GFF5003 0.72 -0.5
103,524 + GFF5003 0.72 -0.2
103,524 + GFF5003 0.72 +0.5
103,524 + GFF5003 0.72 +0.9
103,524 + GFF5003 0.72 -0.4
103,524 + GFF5003 0.72 +0.5
103,524 + GFF5003 0.72 -0.3
103,524 + GFF5003 0.72 +0.2
103,524 + GFF5003 0.72 +0.1
103,524 + GFF5003 0.72 -0.0
103,524 + GFF5003 0.72 -0.8
103,524 + GFF5003 0.72 -0.9
103,524 + GFF5003 0.72 -0.8
103,524 + GFF5003 0.72 -0.2
103,524 + GFF5003 0.72 -0.2
103,524 + GFF5003 0.72 +0.7
103,525 - GFF5003 0.73 +1.5
103,525 - GFF5003 0.73 -0.8
103,525 - GFF5003 0.73 -0.0
103,525 - GFF5003 0.73 +0.5
103,525 - GFF5003 0.73 -0.1
103,525 - GFF5003 0.73 -1.3
103,525 - GFF5003 0.73 -0.0
103,525 - GFF5003 0.73 -0.3
103,525 - GFF5003 0.73 -0.2
103,525 - GFF5003 0.73 -0.3
103,525 - GFF5003 0.73 +0.7
103,791 + -0.9
103,792 - -0.6
103,792 - -0.1
103,792 - -1.7
103,924 + -0.9
103,924 + -0.3
103,924 + -0.0
103,925 - +1.5
103,925 - -0.1
103,925 - -0.3
103,925 - +1.1
103,925 - -0.1
103,925 - -2.1
104,005 + GFF5004 0.14 -0.5
104,005 + GFF5004 0.14 -1.2
104,005 + GFF5004 0.14 -1.2
104,006 - GFF5004 0.14 -0.2
104,036 + GFF5004 0.17 +0.9
104,152 + GFF5004 0.27 -0.1
104,152 + GFF5004 0.27 +0.2
104,153 - GFF5004 0.27 +0.3
104,153 - GFF5004 0.27 -2.1
104,153 - GFF5004 0.27 -0.9
104,153 - GFF5004 0.27 -0.2
104,155 + GFF5004 0.27 -0.1
104,155 + GFF5004 0.27 -0.9
104,155 + GFF5004 0.27 +2.0
104,156 - GFF5004 0.27 -0.2
104,156 - GFF5004 0.27 -0.7
104,156 - GFF5004 0.27 -2.1
104,653 + GFF5004 0.68 -0.7
104,653 + GFF5004 0.68 -0.7
104,653 + GFF5004 0.68 -1.1
104,653 + GFF5004 0.68 -0.4
104,653 + GFF5004 0.68 -1.2
104,654 - GFF5004 0.68 -0.7
104,654 - GFF5004 0.68 +0.3
104,654 - GFF5004 0.68 -0.6
104,654 - GFF5004 0.68 +1.3
104,654 - GFF5004 0.68 +0.1
104,654 - GFF5004 0.68 +0.4
104,654 - GFF5004 0.68 -0.3
104,654 - GFF5004 0.68 -0.5
104,654 - GFF5004 0.68 +0.0
104,654 - GFF5004 0.68 +0.9
104,654 - GFF5004 0.68 -0.6
104,654 - GFF5004 0.68 -0.0
104,654 - GFF5004 0.68 -0.5

Or see this region's nucleotide sequence