Strain Fitness in Variovorax sp. SCN45 around GFF491

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF490 and GFF491 are separated by 24 nucleotidesGFF491 and GFF492 are separated by 128 nucleotides GFF490 - Cell division trigger factor (EC 5.2.1.8), at 530,925 to 532,241 GFF490 GFF491 - no description, at 532,266 to 532,382 GFF491 GFF492 - no description, at 532,511 to 533,476 GFF492 Position (kb) 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 531.574 kb on + strand, within GFF490at 531.574 kb on + strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.064 kb on - strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.290 kb on + strand, within GFF491at 532.296 kb on + strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.330 kb on + strand, within GFF491at 532.331 kb on - strand, within GFF491at 532.331 kb on - strand, within GFF491at 532.380 kb on + strandat 532.380 kb on + strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.449 kb on - strandat 532.449 kb on - strandat 532.459 kb on + strandat 532.459 kb on + strandat 532.459 kb on + strandat 532.460 kb on - strandat 532.460 kb on - strandat 532.460 kb on - strandat 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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531,574 + GFF490 0.49 -2.1
531,574 + GFF490 0.49 -1.2
531,575 - GFF490 0.49 -1.8
531,575 - GFF490 0.49 +0.8
531,575 - GFF490 0.49 -2.2
531,794 + GFF490 0.66 -1.4
531,794 + GFF490 0.66 -0.5
531,794 + GFF490 0.66 -0.2
531,794 + GFF490 0.66 +0.6
531,794 + GFF490 0.66 -2.3
531,794 + GFF490 0.66 -0.0
531,795 - GFF490 0.66 -0.5
531,795 - GFF490 0.66 -1.6
531,795 - GFF490 0.66 -0.2
531,795 - GFF490 0.66 -0.3
532,051 + GFF490 0.85 -0.6
532,051 + GFF490 0.85 -1.0
532,051 + GFF490 0.85 -0.5
532,052 - GFF490 0.86 -0.9
532,052 - GFF490 0.86 -0.9
532,052 - GFF490 0.86 -0.1
532,064 - GFF490 0.86 +0.3
532,069 + GFF490 0.87 -0.1
532,069 + GFF490 0.87 -0.1
532,069 + GFF490 0.87 +0.6
532,070 - GFF490 0.87 -0.8
532,070 - GFF490 0.87 -1.8
532,070 - GFF490 0.87 -0.6
532,070 - GFF490 0.87 +0.2
532,070 - GFF490 0.87 -1.3
532,290 + GFF491 0.21 +0.3
532,296 + GFF491 0.26 -1.3
532,297 - GFF491 0.26 -0.2
532,297 - GFF491 0.26 -0.2
532,297 - GFF491 0.26 -1.6
532,297 - GFF491 0.26 -0.6
532,311 + GFF491 0.38 -0.2
532,311 + GFF491 0.38 -0.6
532,311 + GFF491 0.38 -0.5
532,312 - GFF491 0.39 -0.2
532,312 - GFF491 0.39 -0.6
532,312 - GFF491 0.39 -0.1
532,312 - GFF491 0.39 -0.1
532,330 + GFF491 0.55 +2.4
532,331 - GFF491 0.56 -1.4
532,331 - GFF491 0.56 -0.2
532,380 + +0.6
532,380 + -2.3
532,381 - -0.5
532,381 - -0.4
532,381 - -0.7
532,449 - +0.5
532,449 - -0.3
532,459 + -0.6
532,459 + +0.8
532,459 + +0.8
532,460 - -0.3
532,460 - -0.6
532,460 - -0.5
532,631 + GFF492 0.12 -0.1
532,631 + GFF492 0.12 +1.9
532,631 + GFF492 0.12 +0.1
532,631 + GFF492 0.12 -0.1
532,631 + GFF492 0.12 -0.1
532,631 + GFF492 0.12 -1.4
532,632 - GFF492 0.13 +1.2
532,632 - GFF492 0.13 -1.7
532,632 - GFF492 0.13 -0.6
532,632 - GFF492 0.13 +0.7
532,632 - GFF492 0.13 +0.2
533,105 + GFF492 0.61 +0.9
533,105 + GFF492 0.61 +0.8
533,105 + GFF492 0.61 -1.0
533,105 + GFF492 0.61 -1.9
533,105 + GFF492 0.61 -0.4
533,105 + GFF492 0.61 -0.2
533,105 + GFF492 0.61 +0.4
533,106 - GFF492 0.62 -1.0
533,106 - GFF492 0.62 -2.8
533,106 - GFF492 0.62 -2.3
533,106 - GFF492 0.62 +1.7
533,106 - GFF492 0.62 +0.0
533,106 - GFF492 0.62 -0.6
533,106 - GFF492 0.62 -0.2
533,106 - GFF492 0.62 -0.6
533,106 - GFF492 0.62 -1.1
533,106 - GFF492 0.62 -1.4
533,106 - GFF492 0.62 -0.2

Or see this region's nucleotide sequence