Strain Fitness in Variovorax sp. SCN45 around GFF4903

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4902 and GFF4903 overlap by 4 nucleotidesGFF4903 and GFF4904 are separated by 44 nucleotidesGFF4904 and GFF4905 are separated by 16 nucleotides GFF4902 - hypothetical protein, at 267,458 to 268,879 GFF4902 GFF4903 - no description, at 268,876 to 269,082 GFF4903 GFF4904 - hypothetical protein, at 269,127 to 269,723 GFF4904 GFF4905 - hypothetical protein, at 269,740 to 271,149 GFF4905 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.205 kb on + strand, within GFF4902at 268.205 kb on + strand, within GFF4902at 268.205 kb on + strand, within GFF4902at 268.205 kb on + strand, within GFF4902at 268.205 kb on + strand, within GFF4902at 268.206 kb on - strand, within GFF4902at 268.270 kb on - strand, within GFF4902at 268.270 kb on - strand, within GFF4902at 268.270 kb on - strand, within GFF4902at 268.270 kb on - strand, within GFF4902at 268.270 kb on - strand, within GFF4902at 268.448 kb on + strand, within GFF4902at 268.448 kb on + strand, within GFF4902at 268.449 kb on - strand, within GFF4902at 268.449 kb on - strand, within GFF4902at 268.449 kb on - strand, within GFF4902at 268.802 kb on + strandat 268.802 kb on + strandat 269.024 kb on - strand, within GFF4903at 269.126 kb on + strandat 269.126 kb on + strandat 269.127 kb on - strandat 269.140 kb on + strandat 269.371 kb on - strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.660 kb on + strand, within GFF4904at 269.661 kb on - strand, within GFF4904at 270.011 kb on - strand, within GFF4905at 270.011 kb on - strand, within GFF4905at 270.011 kb on - strand, within GFF4905at 270.022 kb on + strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.024 kb on - strand, within GFF4905at 270.073 kb on + strand, within GFF4905at 270.073 kb on + strand, within GFF4905at 270.073 kb on + strand, within GFF4905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
268,205 + GFF4902 0.53 -0.6
268,205 + GFF4902 0.53 -1.3
268,205 + GFF4902 0.53 +0.2
268,205 + GFF4902 0.53 -1.3
268,205 + GFF4902 0.53 +1.5
268,206 - GFF4902 0.53 +0.6
268,270 - GFF4902 0.57 +0.2
268,270 - GFF4902 0.57 +1.0
268,270 - GFF4902 0.57 +0.3
268,270 - GFF4902 0.57 -0.8
268,270 - GFF4902 0.57 -0.5
268,448 + GFF4902 0.70 -2.3
268,448 + GFF4902 0.70 -0.5
268,449 - GFF4902 0.70 +1.1
268,449 - GFF4902 0.70 -0.7
268,449 - GFF4902 0.70 -0.2
268,802 + -0.4
268,802 + -1.3
269,024 - GFF4903 0.71 -2.7
269,126 + -0.2
269,126 + -0.5
269,127 - -0.8
269,140 + -0.1
269,371 - GFF4904 0.41 -0.0
269,385 + GFF4904 0.43 -0.8
269,385 + GFF4904 0.43 +0.1
269,385 + GFF4904 0.43 -0.2
269,385 + GFF4904 0.43 -2.8
269,385 + GFF4904 0.43 -0.1
269,385 + GFF4904 0.43 -1.3
269,386 - GFF4904 0.43 -0.9
269,386 - GFF4904 0.43 -1.7
269,386 - GFF4904 0.43 -0.6
269,386 - GFF4904 0.43 -0.1
269,386 - GFF4904 0.43 +1.1
269,386 - GFF4904 0.43 -0.1
269,400 + GFF4904 0.46 -1.4
269,400 + GFF4904 0.46 +0.1
269,400 + GFF4904 0.46 -0.4
269,400 + GFF4904 0.46 -1.2
269,400 + GFF4904 0.46 -0.7
269,401 - GFF4904 0.46 +0.2
269,401 - GFF4904 0.46 +0.8
269,401 - GFF4904 0.46 +0.2
269,401 - GFF4904 0.46 -0.6
269,401 - GFF4904 0.46 -0.3
269,401 - GFF4904 0.46 -0.8
269,401 - GFF4904 0.46 -0.5
269,415 + GFF4904 0.48 -1.4
269,415 + GFF4904 0.48 +0.4
269,415 + GFF4904 0.48 +0.7
269,415 + GFF4904 0.48 -0.5
269,415 + GFF4904 0.48 +0.8
269,416 - GFF4904 0.48 -0.9
269,416 - GFF4904 0.48 -1.8
269,416 - GFF4904 0.48 +2.5
269,416 - GFF4904 0.48 -0.3
269,416 - GFF4904 0.48 -0.5
269,660 + GFF4904 0.89 +0.1
269,661 - GFF4904 0.89 -0.5
270,011 - GFF4905 0.19 -0.9
270,011 - GFF4905 0.19 +0.7
270,011 - GFF4905 0.19 -0.1
270,022 + GFF4905 0.20 -0.9
270,023 - GFF4905 0.20 +0.3
270,023 - GFF4905 0.20 -1.9
270,023 - GFF4905 0.20 -2.2
270,023 - GFF4905 0.20 -0.7
270,023 - GFF4905 0.20 +0.0
270,024 - GFF4905 0.20 +0.3
270,073 + GFF4905 0.24 -0.1
270,073 + GFF4905 0.24 +0.4
270,073 + GFF4905 0.24 -0.5

Or see this region's nucleotide sequence