Strain Fitness in Variovorax sp. SCN45 around GFF4874

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4871 and GFF4872 overlap by 4 nucleotidesGFF4872 and GFF4873 overlap by 4 nucleotidesGFF4873 and GFF4874 are separated by 50 nucleotidesGFF4874 and GFF4875 are separated by 26 nucleotidesGFF4875 and GFF4876 are separated by 83 nucleotides GFF4871 - FIG00457034: hypothetical protein, at 243,077 to 243,340 GFF4871 GFF4872 - ParA-like protein, at 243,337 to 243,975 GFF4872 GFF4873 - no description, at 243,972 to 244,178 GFF4873 GFF4874 - Plasmid replication initiator protein, at 244,229 to 245,077 GFF4874 GFF4875 - hypothetical protein, at 245,104 to 245,385 GFF4875 GFF4876 - FIG00973848: hypothetical protein, at 245,469 to 246,218 GFF4876 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3at 243.527 kb on - strand, within GFF4872at 243.527 kb on - strand, within GFF4872at 243.635 kb on + strand, within GFF4872at 243.635 kb on + strand, within GFF4872at 243.636 kb on - strand, within GFF4872at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.065 kb on - strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.080 kb on + strand, within GFF4873at 244.081 kb on - strand, within GFF4873at 244.085 kb on + strand, within GFF4873at 244.094 kb on + strand, within GFF4873at 244.094 kb on + strand, within GFF4873at 244.150 kb on + strand, within GFF4873at 244.158 kb on + strandat 244.158 kb on + strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.173 kb on + strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.197 kb on + strandat 244.197 kb on + strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.231 kb on - strandat 244.314 kb on + strand, within GFF4874at 244.314 kb on + strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.464 kb on + strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.738 kb on + strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 245.141 kb on + strand, within GFF4875at 245.142 kb on - strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.294 kb on + strand, within GFF4875at 245.295 kb on - strand, within GFF4875at 245.321 kb on + strand, within GFF4875at 245.321 kb on + strand, within GFF4875at 245.322 kb on - strand, within GFF4875at 245.355 kb on + strand, within GFF4875at 245.355 kb on + strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.526 kb on + strandat 245.526 kb on + strandat 245.527 kb on - strandat 245.608 kb on + strand, within GFF4876at 245.608 kb on + strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.658 kb on + strand, within GFF4876at 245.659 kb on - strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.837 kb on - strand, within GFF4876

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
243,527 - GFF4872 0.30 -1.0
243,527 - GFF4872 0.30 -0.5
243,635 + GFF4872 0.47 +0.5
243,635 + GFF4872 0.47 +0.3
243,636 - GFF4872 0.47 +0.6
244,061 + GFF4873 0.43 +1.7
244,061 + GFF4873 0.43 +0.5
244,061 + GFF4873 0.43 -0.0
244,061 + GFF4873 0.43 +0.1
244,061 + GFF4873 0.43 -0.5
244,061 + GFF4873 0.43 +1.1
244,061 + GFF4873 0.43 +0.1
244,061 + GFF4873 0.43 +0.1
244,061 + GFF4873 0.43 -0.2
244,061 + GFF4873 0.43 +1.1
244,061 + GFF4873 0.43 +0.1
244,061 + GFF4873 0.43 -0.2
244,062 - GFF4873 0.43 +0.8
244,062 - GFF4873 0.43 +0.2
244,062 - GFF4873 0.43 -0.5
244,062 - GFF4873 0.43 -0.6
244,062 - GFF4873 0.43 -1.1
244,062 - GFF4873 0.43 -1.0
244,064 + GFF4873 0.44 +0.3
244,064 + GFF4873 0.44 +0.5
244,064 + GFF4873 0.44 -1.4
244,065 - GFF4873 0.45 -0.2
244,071 + GFF4873 0.48 +0.8
244,071 + GFF4873 0.48 +0.2
244,071 + GFF4873 0.48 -0.6
244,072 - GFF4873 0.48 -0.1
244,072 - GFF4873 0.48 -0.5
244,072 - GFF4873 0.48 +0.1
244,072 - GFF4873 0.48 -0.3
244,080 + GFF4873 0.52 +1.1
244,081 - GFF4873 0.53 -0.8
244,085 + GFF4873 0.55 -1.1
244,094 + GFF4873 0.59 +2.4
244,094 + GFF4873 0.59 -0.4
244,150 + GFF4873 0.86 -0.5
244,158 + +0.2
244,158 + +0.3
244,159 - +0.4
244,159 - +0.0
244,159 - -0.9
244,173 + -0.8
244,174 - +0.0
244,174 - -0.6
244,174 - -1.1
244,174 - -1.3
244,197 + -2.1
244,197 + -1.3
244,198 - -1.1
244,198 - -1.2
244,198 - -1.1
244,231 - +0.7
244,314 + GFF4874 0.10 -0.1
244,314 + GFF4874 0.10 -0.4
244,315 - GFF4874 0.10 -0.4
244,315 - GFF4874 0.10 -1.1
244,315 - GFF4874 0.10 +0.1
244,315 - GFF4874 0.10 -0.0
244,369 - GFF4874 0.16 -0.6
244,369 - GFF4874 0.16 +0.2
244,369 - GFF4874 0.16 +0.3
244,464 + GFF4874 0.28 +0.8
244,465 - GFF4874 0.28 -0.7
244,465 - GFF4874 0.28 -2.5
244,465 - GFF4874 0.28 +0.2
244,465 - GFF4874 0.28 +0.2
244,500 + GFF4874 0.32 +0.5
244,500 + GFF4874 0.32 +0.2
244,501 - GFF4874 0.32 +0.2
244,501 - GFF4874 0.32 +0.6
244,501 - GFF4874 0.32 -0.1
244,501 - GFF4874 0.32 +1.5
244,548 + GFF4874 0.38 +0.3
244,548 + GFF4874 0.38 -0.3
244,548 + GFF4874 0.38 +1.9
244,548 + GFF4874 0.38 +0.1
244,548 + GFF4874 0.38 -0.6
244,738 + GFF4874 0.60 -0.2
244,739 - GFF4874 0.60 -0.7
244,739 - GFF4874 0.60 -0.7
244,767 + GFF4874 0.63 +0.4
244,767 + GFF4874 0.63 -0.9
244,767 + GFF4874 0.63 +0.9
245,141 + GFF4875 0.13 +0.3
245,142 - GFF4875 0.13 -0.7
245,207 + GFF4875 0.37 -0.3
245,207 + GFF4875 0.37 +0.6
245,207 + GFF4875 0.37 -1.2
245,207 + GFF4875 0.37 -0.5
245,207 + GFF4875 0.37 -2.5
245,207 + GFF4875 0.37 -1.3
245,207 + GFF4875 0.37 +1.4
245,207 + GFF4875 0.37 +0.6
245,207 + GFF4875 0.37 -0.1
245,207 + GFF4875 0.37 -0.4
245,208 - GFF4875 0.37 -0.6
245,208 - GFF4875 0.37 -0.5
245,208 - GFF4875 0.37 +0.7
245,208 - GFF4875 0.37 +0.8
245,208 - GFF4875 0.37 -1.1
245,208 - GFF4875 0.37 +0.6
245,208 - GFF4875 0.37 -1.5
245,208 - GFF4875 0.37 -1.9
245,208 - GFF4875 0.37 +3.5
245,208 - GFF4875 0.37 -0.3
245,208 - GFF4875 0.37 +0.2
245,208 - GFF4875 0.37 -0.5
245,294 + GFF4875 0.67 -1.3
245,295 - GFF4875 0.68 -1.1
245,321 + GFF4875 0.77 +0.9
245,321 + GFF4875 0.77 -0.2
245,322 - GFF4875 0.77 -0.7
245,355 + GFF4875 0.89 -0.2
245,355 + GFF4875 0.89 -0.9
245,356 - GFF4875 0.89 +0.3
245,356 - GFF4875 0.89 -0.1
245,356 - GFF4875 0.89 -2.0
245,526 + -0.1
245,526 + -0.5
245,527 - +1.5
245,608 + GFF4876 0.19 +0.3
245,608 + GFF4876 0.19 +0.1
245,609 - GFF4876 0.19 +0.4
245,609 - GFF4876 0.19 -0.2
245,609 - GFF4876 0.19 +0.4
245,609 - GFF4876 0.19 +0.4
245,609 - GFF4876 0.19 -0.5
245,649 + GFF4876 0.24 +0.2
245,649 + GFF4876 0.24 -1.6
245,649 + GFF4876 0.24 +0.9
245,649 + GFF4876 0.24 -0.6
245,649 + GFF4876 0.24 -0.4
245,649 + GFF4876 0.24 -1.1
245,649 + GFF4876 0.24 -0.5
245,649 + GFF4876 0.24 -0.5
245,650 - GFF4876 0.24 -0.2
245,650 - GFF4876 0.24 -1.3
245,650 - GFF4876 0.24 -0.3
245,650 - GFF4876 0.24 -0.5
245,650 - GFF4876 0.24 -1.2
245,650 - GFF4876 0.24 -0.5
245,658 + GFF4876 0.25 -1.7
245,659 - GFF4876 0.25 +0.2
245,794 + GFF4876 0.43 +0.5
245,794 + GFF4876 0.43 +0.5
245,794 + GFF4876 0.43 -0.9
245,794 + GFF4876 0.43 -0.5
245,795 - GFF4876 0.43 +1.1
245,795 - GFF4876 0.43 +0.2
245,795 - GFF4876 0.43 +0.3
245,836 + GFF4876 0.49 +0.2
245,836 + GFF4876 0.49 +1.0
245,836 + GFF4876 0.49 +1.1
245,837 - GFF4876 0.49 -0.2

Or see this region's nucleotide sequence