Strain Fitness in Variovorax sp. SCN45 around GFF4869

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4868 and GFF4869 are separated by 436 nucleotidesGFF4869 and GFF4870 overlap by 4 nucleotidesGFF4870 and GFF4871 overlap by 4 nucleotidesGFF4871 and GFF4872 overlap by 4 nucleotides GFF4868 - Type IV secretory pathway, VirD2 components (relaxase), at 239,544 to 241,526 GFF4868 GFF4869 - Type IV secretory pathway, protease TraF, at 241,963 to 242,550 GFF4869 GFF4870 - Glycosidases, at 242,547 to 243,080 GFF4870 GFF4871 - FIG00457034: hypothetical protein, at 243,077 to 243,340 GFF4871 GFF4872 - ParA-like protein, at 243,337 to 243,975 GFF4872 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 241.040 kb on + strand, within GFF4868at 241.041 kb on - strand, within GFF4868at 241.041 kb on - strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.042 kb on + strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.043 kb on - strand, within GFF4868at 241.088 kb on + strand, within GFF4868at 241.165 kb on + strand, within GFF4868at 241.165 kb on + strand, within GFF4868at 241.166 kb on - strand, within GFF4868at 241.166 kb on - strand, within GFF4868at 241.212 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.214 kb on - strand, within GFF4868at 241.385 kb on + strandat 241.385 kb on + strandat 241.385 kb on + strandat 241.385 kb on + strandat 241.385 kb on + strandat 241.386 kb on - strandat 241.386 kb on - strandat 241.386 kb on - strandat 241.386 kb on - strandat 241.415 kb on + strandat 241.416 kb on - strandat 241.416 kb on - strandat 241.446 kb on + strandat 241.446 kb on + strandat 241.447 kb on - strandat 241.931 kb on + strandat 241.931 kb on + strandat 241.931 kb on + strandat 241.931 kb on + strandat 241.932 kb on - strandat 241.932 kb on - strandat 241.932 kb on - strandat 241.932 kb on - strandat 242.196 kb on + strand, within GFF4869at 242.196 kb on + strand, within GFF4869at 242.197 kb on - strand, within GFF4869at 242.197 kb on - strand, within GFF4869at 242.258 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.597 kb on - strandat 242.597 kb on - strandat 242.597 kb on - strandat 242.597 kb on - strandat 242.647 kb on + strand, within GFF4870at 242.842 kb on + strand, within GFF4870at 242.842 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 243.143 kb on + strand, within GFF4871at 243.144 kb on - strand, within GFF4871at 243.159 kb on - strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.527 kb on - strand, within GFF4872at 243.527 kb on - strand, within GFF4872

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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241,040 + GFF4868 0.75 +0.1
241,041 - GFF4868 0.75 -1.4
241,041 - GFF4868 0.75 -0.7
241,042 + GFF4868 0.76 +0.1
241,042 + GFF4868 0.76 +0.5
241,042 + GFF4868 0.76 -0.2
241,042 + GFF4868 0.76 -0.2
241,042 + GFF4868 0.76 -0.2
241,042 + GFF4868 0.76 +0.6
241,042 + GFF4868 0.76 -0.7
241,042 + GFF4868 0.76 +1.0
241,042 + GFF4868 0.76 -0.7
241,042 + GFF4868 0.76 +0.9
241,042 + GFF4868 0.76 +0.2
241,042 + GFF4868 0.76 +0.6
241,042 + GFF4868 0.76 -0.1
241,042 + GFF4868 0.76 -0.7
241,043 - GFF4868 0.76 +0.2
241,043 - GFF4868 0.76 -0.4
241,043 - GFF4868 0.76 -0.5
241,043 - GFF4868 0.76 -0.2
241,043 - GFF4868 0.76 -0.4
241,043 - GFF4868 0.76 -0.2
241,043 - GFF4868 0.76 -0.5
241,043 - GFF4868 0.76 -0.1
241,043 - GFF4868 0.76 -0.2
241,043 - GFF4868 0.76 -0.4
241,043 - GFF4868 0.76 -1.0
241,043 - GFF4868 0.76 -0.3
241,088 + GFF4868 0.78 +1.7
241,165 + GFF4868 0.82 -2.1
241,165 + GFF4868 0.82 -1.3
241,166 - GFF4868 0.82 -0.7
241,166 - GFF4868 0.82 -1.5
241,212 - GFF4868 0.84 +0.1
241,214 - GFF4868 0.84 -0.4
241,214 - GFF4868 0.84 -0.3
241,214 - GFF4868 0.84 -0.1
241,214 - GFF4868 0.84 -1.2
241,214 - GFF4868 0.84 -1.1
241,214 - GFF4868 0.84 +0.2
241,214 - GFF4868 0.84 +0.5
241,385 + -1.1
241,385 + +0.5
241,385 + +0.2
241,385 + -1.3
241,385 + +0.0
241,386 - +1.4
241,386 - +0.2
241,386 - -0.6
241,386 - +0.2
241,415 + +0.1
241,416 - +2.9
241,416 - +0.1
241,446 + -0.8
241,446 + -1.1
241,447 - -0.7
241,931 + +0.5
241,931 + +0.5
241,931 + +2.1
241,931 + -2.4
241,932 - -0.1
241,932 - -0.3
241,932 - -0.5
241,932 - +1.3
242,196 + GFF4869 0.40 +0.2
242,196 + GFF4869 0.40 -0.6
242,197 - GFF4869 0.40 -0.8
242,197 - GFF4869 0.40 +0.5
242,258 + GFF4869 0.50 +0.2
242,408 + GFF4869 0.76 +0.2
242,408 + GFF4869 0.76 +1.5
242,408 + GFF4869 0.76 +0.5
242,408 + GFF4869 0.76 +0.8
242,409 - GFF4869 0.76 -0.3
242,409 - GFF4869 0.76 +0.1
242,409 - GFF4869 0.76 -0.2
242,409 - GFF4869 0.76 -0.7
242,409 - GFF4869 0.76 -1.1
242,409 - GFF4869 0.76 +0.1
242,409 - GFF4869 0.76 +0.7
242,409 - GFF4869 0.76 -1.3
242,409 - GFF4869 0.76 +3.3
242,597 - -1.3
242,597 - -2.9
242,597 - +0.8
242,597 - +0.1
242,647 + GFF4870 0.19 +0.8
242,842 + GFF4870 0.55 -0.6
242,842 + GFF4870 0.55 -0.5
242,953 + GFF4870 0.76 -1.3
242,953 + GFF4870 0.76 +0.2
242,953 + GFF4870 0.76 +0.4
242,953 + GFF4870 0.76 -0.2
242,953 + GFF4870 0.76 +0.3
242,954 - GFF4870 0.76 +1.7
242,954 - GFF4870 0.76 -0.5
242,954 - GFF4870 0.76 +0.9
242,977 + GFF4870 0.81 -0.3
242,977 + GFF4870 0.81 +0.2
242,977 + GFF4870 0.81 -2.1
242,977 + GFF4870 0.81 -0.2
242,977 + GFF4870 0.81 -0.5
242,977 + GFF4870 0.81 +0.2
242,977 + GFF4870 0.81 -0.1
242,977 + GFF4870 0.81 +0.5
242,977 + GFF4870 0.81 -1.2
242,977 + GFF4870 0.81 +0.1
242,977 + GFF4870 0.81 +1.1
242,977 + GFF4870 0.81 +0.2
242,977 + GFF4870 0.81 -1.2
242,977 + GFF4870 0.81 -1.3
242,977 + GFF4870 0.81 +0.2
242,977 + GFF4870 0.81 -1.0
242,977 + GFF4870 0.81 -0.3
242,977 + GFF4870 0.81 -0.5
242,977 + GFF4870 0.81 -1.1
242,978 - GFF4870 0.81 -0.3
242,978 - GFF4870 0.81 +0.8
242,978 - GFF4870 0.81 -0.2
242,978 - GFF4870 0.81 +0.4
242,978 - GFF4870 0.81 -0.0
242,978 - GFF4870 0.81 -2.3
242,978 - GFF4870 0.81 -1.1
242,978 - GFF4870 0.81 -2.0
242,978 - GFF4870 0.81 -0.8
242,978 - GFF4870 0.81 +0.2
242,978 - GFF4870 0.81 -0.2
242,978 - GFF4870 0.81 -0.5
243,143 + GFF4871 0.25 -0.5
243,144 - GFF4871 0.25 -0.7
243,159 - GFF4871 0.31 -1.3
243,213 + GFF4871 0.52 -1.0
243,213 + GFF4871 0.52 -1.9
243,213 + GFF4871 0.52 +0.8
243,213 + GFF4871 0.52 +1.0
243,213 + GFF4871 0.52 -1.5
243,527 - GFF4872 0.30 -1.0
243,527 - GFF4872 0.30 -0.5

Or see this region's nucleotide sequence