Strain Fitness in Variovorax sp. SCN45 around GFF4804

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4803 and GFF4804 overlap by 4 nucleotidesGFF4804 and GFF4805 are separated by 45 nucleotides GFF4803 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 173,339 to 174,829 GFF4803 GFF4804 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 174,826 to 175,383 GFF4804 GFF4805 - Epoxyqueuosine reductase (EC 1.17.99.6) QueG, at 175,429 to 176,391 GFF4805 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.414 kb on + strand, within GFF4803at 174.415 kb on - strand, within GFF4803at 174.441 kb on + strand, within GFF4803at 174.441 kb on + strand, within GFF4803at 174.442 kb on - strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.554 kb on - strand, within GFF4803at 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.348 kb on - strandat 175.348 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.988 kb on - strand, within GFF4805at 175.990 kb on + strand, within GFF4805at 175.991 kb on - strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.058 kb on - strand, within GFF4805

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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174,130 + GFF4803 0.53 +1.2
174,130 + GFF4803 0.53 +0.9
174,130 + GFF4803 0.53 -0.1
174,130 + GFF4803 0.53 -1.3
174,296 - GFF4803 0.64 -0.1
174,296 - GFF4803 0.64 -0.2
174,296 - GFF4803 0.64 +1.0
174,296 - GFF4803 0.64 -0.9
174,296 - GFF4803 0.64 -0.1
174,296 - GFF4803 0.64 +0.4
174,414 + GFF4803 0.72 -0.7
174,415 - GFF4803 0.72 +0.1
174,441 + GFF4803 0.74 -0.1
174,441 + GFF4803 0.74 +2.3
174,442 - GFF4803 0.74 -1.1
174,552 + GFF4803 0.81 -0.8
174,552 + GFF4803 0.81 -1.2
174,552 + GFF4803 0.81 +2.3
174,552 + GFF4803 0.81 +0.0
174,552 + GFF4803 0.81 -0.3
174,552 + GFF4803 0.81 -0.4
174,553 - GFF4803 0.81 -1.1
174,553 - GFF4803 0.81 +0.4
174,553 - GFF4803 0.81 -0.9
174,553 - GFF4803 0.81 +0.2
174,553 - GFF4803 0.81 +0.1
174,553 - GFF4803 0.81 +0.1
174,553 - GFF4803 0.81 +1.1
174,554 - GFF4803 0.81 -0.6
174,702 + -1.1
174,702 + +0.0
174,702 + -0.2
174,702 + +0.2
174,703 - +1.4
174,703 - -1.3
174,703 - -1.8
174,703 - -0.3
175,306 + GFF4804 0.86 +0.2
175,306 + GFF4804 0.86 +0.8
175,306 + GFF4804 0.86 -2.2
175,348 - +1.2
175,348 - -1.2
175,407 - +0.3
175,407 - -2.1
175,407 - +0.5
175,468 + -0.8
175,468 + +0.0
175,468 + -1.3
175,468 + +0.5
175,468 + -0.2
175,468 + +1.2
175,468 + -0.3
175,468 + -1.1
175,468 + +0.4
175,468 + +0.5
175,468 + +0.3
175,468 + -0.7
175,468 + -0.2
175,468 + -0.3
175,468 + +0.2
175,469 - -0.3
175,469 - -0.3
175,469 - -0.5
175,552 + GFF4805 0.13 -1.7
175,552 + GFF4805 0.13 +1.2
175,552 + GFF4805 0.13 -0.1
175,552 + GFF4805 0.13 -0.6
175,552 + GFF4805 0.13 +0.5
175,553 - GFF4805 0.13 -0.5
175,553 - GFF4805 0.13 +0.7
175,553 - GFF4805 0.13 +1.4
175,553 - GFF4805 0.13 -1.5
175,553 - GFF4805 0.13 +0.7
175,553 - GFF4805 0.13 -0.5
175,636 + GFF4805 0.21 -0.7
175,636 + GFF4805 0.21 +1.2
175,636 + GFF4805 0.21 -0.2
175,637 - GFF4805 0.22 +0.5
175,637 - GFF4805 0.22 -1.1
175,637 - GFF4805 0.22 +0.3
175,637 - GFF4805 0.22 -0.4
175,637 - GFF4805 0.22 -2.0
175,637 - GFF4805 0.22 +0.2
175,637 - GFF4805 0.22 +0.2
175,637 - GFF4805 0.22 +0.4
175,637 - GFF4805 0.22 -0.6
175,637 - GFF4805 0.22 -0.5
175,637 - GFF4805 0.22 -1.4
175,637 - GFF4805 0.22 +2.5
175,637 - GFF4805 0.22 -2.8
175,654 + GFF4805 0.23 +0.1
175,654 + GFF4805 0.23 -0.5
175,654 + GFF4805 0.23 -0.7
175,654 + GFF4805 0.23 -1.2
175,655 - GFF4805 0.23 -0.0
175,655 - GFF4805 0.23 -2.3
175,655 - GFF4805 0.23 +0.8
175,655 - GFF4805 0.23 +1.9
175,655 - GFF4805 0.23 -2.1
175,655 - GFF4805 0.23 -1.2
175,858 + GFF4805 0.45 -0.5
175,858 + GFF4805 0.45 -1.7
175,858 + GFF4805 0.45 -1.1
175,858 + GFF4805 0.45 -0.2
175,858 + GFF4805 0.45 -0.7
175,858 + GFF4805 0.45 -1.9
175,858 + GFF4805 0.45 -1.1
175,859 - GFF4805 0.45 -0.2
175,859 - GFF4805 0.45 +0.0
175,988 - GFF4805 0.58 -0.7
175,990 + GFF4805 0.58 -3.4
175,991 - GFF4805 0.58 -0.1
176,056 + GFF4805 0.65 -0.4
176,056 + GFF4805 0.65 -1.1
176,056 + GFF4805 0.65 -0.4
176,056 + GFF4805 0.65 -1.3
176,056 + GFF4805 0.65 +0.5
176,057 - GFF4805 0.65 +0.4
176,057 - GFF4805 0.65 +0.5
176,057 - GFF4805 0.65 -0.2
176,058 - GFF4805 0.65 +0.5

Or see this region's nucleotide sequence