Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4630 and GFF4631 are separated by 3 nucleotides GFF4631 and GFF4632 are separated by 3 nucleotides GFF4632 and GFF4633 overlap by 4 nucleotides GFF4633 and GFF4634 are separated by 1 nucleotides
GFF4630 - O-antigen export system permease protein RfbD, at 271,997 to 272,800
GFF4630
GFF4631 - ABC transporter, at 272,804 to 273,505
GFF4631
GFF4632 - Glycosyl transferase, family 2, at 273,509 to 274,456
GFF4632
GFF4633 - no description, at 274,453 to 274,818
GFF4633
GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737
GFF4634
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.598 kb on - strand at 273.598 kb on - strand at 273.598 kb on - strand at 273.714 kb on + strand, within GFF4632 at 273.715 kb on - strand, within GFF4632 at 273.715 kb on - strand, within GFF4632 at 273.822 kb on + strand, within GFF4632 at 273.823 kb on - strand, within GFF4632 at 273.823 kb on - strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.831 kb on + strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.832 kb on - strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.876 kb on + strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.877 kb on - strand, within GFF4632 at 273.927 kb on + strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 273.979 kb on - strand, within GFF4632 at 274.041 kb on + strand, within GFF4632 at 274.042 kb on - strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.044 kb on + strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.045 kb on - strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.350 kb on + strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.351 kb on - strand, within GFF4632 at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.426 kb on - strand at 274.535 kb on + strand, within GFF4633 at 274.535 kb on + strand, within GFF4633 at 274.536 kb on - strand, within GFF4633 at 274.536 kb on - strand, within GFF4633 at 274.563 kb on - strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.601 kb on + strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.602 kb on - strand, within GFF4633 at 274.735 kb on + strand, within GFF4633 at 274.757 kb on + strand, within GFF4633 at 274.908 kb on + strand at 274.908 kb on + strand at 274.909 kb on - strand at 274.909 kb on - strand at 275.280 kb on + strand, within GFF4634 at 275.280 kb on + strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.281 kb on - strand, within GFF4634 at 275.359 kb on + strand, within GFF4634 at 275.360 kb on - strand, within GFF4634 at 275.360 kb on - strand, within GFF4634 at 275.361 kb on + strand, within GFF4634 at 275.361 kb on + strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.362 kb on - strand, within GFF4634 at 275.386 kb on + strand, within GFF4634 at 275.425 kb on - strand, within GFF4634 at 275.425 kb on - strand, within GFF4634 at 275.425 kb on - strand, within GFF4634
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 273,598 - -0.3 273,598 - +0.6 273,598 - -1.9 273,714 + GFF4632 0.22 +0.0 273,715 - GFF4632 0.22 -0.6 273,715 - GFF4632 0.22 -1.9 273,822 + GFF4632 0.33 -0.1 273,823 - GFF4632 0.33 -0.4 273,823 - GFF4632 0.33 -0.2 273,831 + GFF4632 0.34 -0.9 273,831 + GFF4632 0.34 +0.4 273,831 + GFF4632 0.34 +0.2 273,831 + GFF4632 0.34 -3.0 273,831 + GFF4632 0.34 -1.2 273,831 + GFF4632 0.34 -1.4 273,832 - GFF4632 0.34 -0.9 273,832 - GFF4632 0.34 -0.1 273,832 - GFF4632 0.34 -0.7 273,832 - GFF4632 0.34 -1.3 273,832 - GFF4632 0.34 -0.3 273,832 - GFF4632 0.34 -1.3 273,832 - GFF4632 0.34 +0.1 273,832 - GFF4632 0.34 -0.4 273,832 - GFF4632 0.34 +1.2 273,832 - GFF4632 0.34 -0.9 273,876 + GFF4632 0.39 -0.2 273,876 + GFF4632 0.39 -0.5 273,876 + GFF4632 0.39 +0.1 273,877 - GFF4632 0.39 -0.8 273,877 - GFF4632 0.39 -0.2 273,877 - GFF4632 0.39 -0.5 273,927 + GFF4632 0.44 +0.6 273,979 - GFF4632 0.50 -0.6 273,979 - GFF4632 0.50 +0.9 273,979 - GFF4632 0.50 +0.3 274,041 + GFF4632 0.56 -0.6 274,042 - GFF4632 0.56 +0.0 274,044 + GFF4632 0.56 -1.2 274,044 + GFF4632 0.56 +0.8 274,044 + GFF4632 0.56 -1.7 274,044 + GFF4632 0.56 -1.0 274,045 - GFF4632 0.57 -0.5 274,045 - GFF4632 0.57 -1.7 274,045 - GFF4632 0.57 -1.1 274,350 + GFF4632 0.89 -0.4 274,350 + GFF4632 0.89 -0.4 274,350 + GFF4632 0.89 +0.1 274,350 + GFF4632 0.89 -0.1 274,350 + GFF4632 0.89 -0.0 274,350 + GFF4632 0.89 -0.6 274,350 + GFF4632 0.89 +0.5 274,351 - GFF4632 0.89 -0.8 274,351 - GFF4632 0.89 +0.3 274,351 - GFF4632 0.89 -1.1 274,351 - GFF4632 0.89 -1.1 274,351 - GFF4632 0.89 +1.5 274,351 - GFF4632 0.89 -0.0 274,351 - GFF4632 0.89 -2.9 274,351 - GFF4632 0.89 -0.2 274,426 - +1.8 274,426 - -1.5 274,426 - +0.1 274,426 - +0.2 274,426 - -0.8 274,426 - +0.3 274,426 - -0.0 274,535 + GFF4633 0.22 -1.3 274,535 + GFF4633 0.22 -0.7 274,536 - GFF4633 0.23 -1.1 274,536 - GFF4633 0.23 -2.0 274,563 - GFF4633 0.30 -0.7 274,601 + GFF4633 0.40 -0.8 274,601 + GFF4633 0.40 +0.8 274,601 + GFF4633 0.40 +0.5 274,602 - GFF4633 0.41 +1.0 274,602 - GFF4633 0.41 -0.4 274,602 - GFF4633 0.41 +0.9 274,735 + GFF4633 0.77 -1.5 274,757 + GFF4633 0.83 +0.3 274,908 + -1.1 274,908 + -1.0 274,909 - -0.8 274,909 - -1.8 275,280 + GFF4634 0.50 +0.8 275,280 + GFF4634 0.50 -0.3 275,281 - GFF4634 0.50 -0.1 275,281 - GFF4634 0.50 -0.2 275,281 - GFF4634 0.50 -0.6 275,359 + GFF4634 0.59 -1.4 275,360 - GFF4634 0.59 +1.5 275,360 - GFF4634 0.59 +0.6 275,361 + GFF4634 0.59 +0.4 275,361 + GFF4634 0.59 -0.3 275,362 - GFF4634 0.59 +0.1 275,362 - GFF4634 0.59 -0.4 275,362 - GFF4634 0.59 -0.2 275,386 + GFF4634 0.62 -0.7 275,425 - GFF4634 0.66 -2.5 275,425 - GFF4634 0.66 -0.1 275,425 - GFF4634 0.66 +1.5
Or see this region's nucleotide sequence