Strain Fitness in Variovorax sp. SCN45 around GFF463

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF462 and GFF463 are separated by 100 nucleotidesGFF463 and GFF464 are separated by 28 nucleotidesGFF464 and GFF465 are separated by 112 nucleotides GFF462 - BUG/TctC family periplasmic protein, at 500,952 to 501,938 GFF462 GFF463 - Malonyl-CoA decarboxylase (EC 4.1.1.9), at 502,039 to 503,505 GFF463 GFF464 - Transcriptional regulator, GntR family, at 503,534 to 504,202 GFF464 GFF465 - Prolipoprotein diacylglyceryl transferase, at 504,315 to 505,139 GFF465 Position (kb) 502 503 504Strain fitness (log2 ratio) -2 -1 0 1 2at 501.170 kb on - strand, within GFF462at 501.187 kb on + strand, within GFF462at 501.187 kb on + strand, within GFF462at 501.188 kb on - strand, within GFF462at 501.188 kb on - strand, within GFF462at 501.188 kb on - strand, within GFF462at 501.219 kb on + strand, within GFF462at 501.219 kb on + strand, within GFF462at 501.219 kb on + strand, within GFF462at 501.219 kb on + strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.220 kb on - strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.289 kb on + strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.290 kb on - strand, within GFF462at 501.460 kb on + strand, within GFF462at 501.460 kb on + strand, within GFF462at 501.601 kb on + strand, within GFF462at 501.665 kb on - strand, within GFF462at 502.136 kb on + strandat 502.137 kb on - strandat 502.137 kb on - strandat 502.142 kb on + strandat 502.142 kb on + strandat 502.142 kb on + strandat 502.143 kb on - strandat 502.143 kb on - strandat 502.143 kb on - strandat 502.143 kb on - strandat 502.161 kb on - strandat 502.289 kb on + strand, within GFF463at 502.290 kb on - strand, within GFF463at 502.763 kb on + strand, within GFF463at 502.763 kb on + strand, within GFF463at 502.764 kb on - strand, within GFF463at 502.952 kb on - strand, within GFF463at 503.196 kb on - strand, within GFF463at 503.229 kb on - strand, within GFF463at 503.732 kb on + strand, within GFF464at 503.732 kb on + strand, within GFF464at 503.733 kb on - strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.820 kb on + strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.821 kb on - strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.823 kb on + strand, within GFF464at 503.824 kb on - strand, within GFF464at 503.824 kb on - strand, within GFF464at 503.824 kb on - strand, within GFF464at 503.824 kb on - strand, within GFF464at 503.824 kb on - strand, within GFF464at 503.923 kb on - strand, within GFF464at 503.923 kb on - strand, within GFF464at 504.230 kb on + strandat 504.237 kb on - strandat 504.296 kb on + strandat 504.296 kb on + strandat 504.296 kb on + strandat 504.296 kb on + strandat 504.296 kb on + strandat 504.296 kb on + strandat 504.297 kb on - strandat 504.297 kb on - strandat 504.297 kb on - strandat 504.297 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
501,170 - GFF462 0.22 -2.1
501,187 + GFF462 0.24 -1.3
501,187 + GFF462 0.24 +2.4
501,188 - GFF462 0.24 -0.0
501,188 - GFF462 0.24 -0.7
501,188 - GFF462 0.24 -0.6
501,219 + GFF462 0.27 -1.0
501,219 + GFF462 0.27 -0.6
501,219 + GFF462 0.27 -0.9
501,219 + GFF462 0.27 -0.5
501,220 - GFF462 0.27 -0.1
501,220 - GFF462 0.27 -1.8
501,220 - GFF462 0.27 -2.3
501,220 - GFF462 0.27 -1.1
501,220 - GFF462 0.27 -1.1
501,220 - GFF462 0.27 +0.9
501,220 - GFF462 0.27 -0.5
501,220 - GFF462 0.27 +1.0
501,289 + GFF462 0.34 -0.6
501,289 + GFF462 0.34 -0.4
501,289 + GFF462 0.34 -1.3
501,289 + GFF462 0.34 -1.9
501,289 + GFF462 0.34 -0.0
501,289 + GFF462 0.34 -0.9
501,289 + GFF462 0.34 +1.4
501,289 + GFF462 0.34 -0.5
501,290 - GFF462 0.34 -0.5
501,290 - GFF462 0.34 -0.0
501,290 - GFF462 0.34 +1.7
501,290 - GFF462 0.34 +0.7
501,290 - GFF462 0.34 -0.9
501,290 - GFF462 0.34 -0.8
501,290 - GFF462 0.34 -1.2
501,460 + GFF462 0.51 -0.3
501,460 + GFF462 0.51 +0.4
501,601 + GFF462 0.66 +1.0
501,665 - GFF462 0.72 +0.1
502,136 + +0.4
502,137 - -0.3
502,137 - +1.4
502,142 + -0.1
502,142 + -1.5
502,142 + -1.2
502,143 - +1.6
502,143 - -0.1
502,143 - -0.8
502,143 - -0.4
502,161 - -0.8
502,289 + GFF463 0.17 -2.5
502,290 - GFF463 0.17 -1.1
502,763 + GFF463 0.49 -0.4
502,763 + GFF463 0.49 -1.6
502,764 - GFF463 0.49 -0.2
502,952 - GFF463 0.62 -0.8
503,196 - GFF463 0.79 -1.6
503,229 - GFF463 0.81 -0.5
503,732 + GFF464 0.30 -0.6
503,732 + GFF464 0.30 -0.7
503,733 - GFF464 0.30 +0.5
503,820 + GFF464 0.43 +0.0
503,820 + GFF464 0.43 +1.2
503,820 + GFF464 0.43 -1.8
503,820 + GFF464 0.43 +0.0
503,820 + GFF464 0.43 -0.3
503,820 + GFF464 0.43 +0.4
503,821 - GFF464 0.43 +0.3
503,821 - GFF464 0.43 -0.8
503,821 - GFF464 0.43 +0.3
503,821 - GFF464 0.43 +0.2
503,821 - GFF464 0.43 +0.1
503,821 - GFF464 0.43 -1.4
503,821 - GFF464 0.43 -0.1
503,823 + GFF464 0.43 -0.1
503,823 + GFF464 0.43 +0.8
503,823 + GFF464 0.43 -0.7
503,823 + GFF464 0.43 -1.0
503,823 + GFF464 0.43 -0.9
503,823 + GFF464 0.43 +0.3
503,824 - GFF464 0.43 -0.9
503,824 - GFF464 0.43 -0.5
503,824 - GFF464 0.43 -0.2
503,824 - GFF464 0.43 -0.4
503,824 - GFF464 0.43 -0.7
503,923 - GFF464 0.58 -0.4
503,923 - GFF464 0.58 +0.1
504,230 + -0.3
504,237 - +1.0
504,296 + +1.0
504,296 + -1.5
504,296 + +0.1
504,296 + -0.2
504,296 + -1.0
504,296 + +0.1
504,297 - -0.2
504,297 - +0.7
504,297 - +1.8
504,297 - +0.6

Or see this region's nucleotide sequence