Strain Fitness in Variovorax sp. SCN45 around GFF4610

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4608 and GFF4609 are separated by 39 nucleotidesGFF4609 and GFF4610 are separated by 47 nucleotidesGFF4610 and GFF4611 are separated by 70 nucleotidesGFF4611 and GFF4612 are separated by 140 nucleotides GFF4608 - 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17), at 249,037 to 251,436 GFF4608 GFF4609 - FIG00581832: hypothetical protein, at 251,476 to 251,910 GFF4609 GFF4610 - Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8), at 251,958 to 253,754 GFF4610 GFF4611 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 253,825 to 254,523 GFF4611 GFF4612 - Short-chain dehydrogenase/reductase SDR, at 254,664 to 255,422 GFF4612 Position (kb) 251 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.979 kb on + strand, within GFF4608at 250.980 kb on - strand, within GFF4608at 250.980 kb on - strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.123 kb on + strand, within GFF4608at 251.207 kb on + strandat 251.207 kb on + strandat 251.207 kb on + strandat 251.208 kb on - strandat 251.446 kb on + strandat 251.446 kb on + strandat 251.446 kb on + strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.447 kb on - strandat 251.477 kb on + strandat 251.477 kb on + strandat 251.477 kb on + strandat 251.478 kb on - strandat 251.478 kb on - strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.949 kb on + strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.950 kb on - strandat 251.952 kb on + strandat 251.952 kb on + strandat 251.953 kb on - strandat 251.953 kb on - strandat 252.052 kb on + strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.053 kb on - strandat 252.082 kb on + strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.181 kb on + strand, within GFF4610at 252.182 kb on - strand, within GFF4610at 252.182 kb on - strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.430 kb on + strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.431 kb on - strand, within GFF4610at 252.817 kb on + strand, within GFF4610at 253.183 kb on + strand, within GFF4610at 253.184 kb on - strand, within GFF4610at 253.184 kb on - strand, within GFF4610at 253.184 kb on - strand, within GFF4610at 253.300 kb on + strand, within GFF4610at 253.300 kb on + strand, within GFF4610at 253.300 kb on + strand, within GFF4610at 253.300 kb on + strand, within GFF4610at 253.300 kb on + strand, within GFF4610at 253.346 kb on - strand, within GFF4610at 253.346 kb on - strand, within GFF4610at 253.369 kb on + strand, within GFF4610at 253.370 kb on - strand, within GFF4610at 253.492 kb on + strand, within GFF4610at 253.492 kb on + strand, within GFF4610at 253.493 kb on - strand, within GFF4610at 253.501 kb on + strand, within GFF4610at 253.501 kb on + strand, within GFF4610at 253.502 kb on - strand, within GFF4610at 253.502 kb on - strand, within GFF4610at 253.744 kb on + strandat 253.744 kb on + strandat 253.744 kb on + strandat 253.744 kb on + strandat 253.744 kb on + strandat 253.744 kb on + strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.745 kb on - strandat 253.749 kb on - strandat 253.749 kb on - strandat 253.749 kb on - strandat 253.749 kb on - strandat 253.777 kb on + strandat 253.777 kb on + strandat 253.778 kb on - strandat 253.781 kb on + strandat 253.982 kb on + strand, within GFF4611at 253.983 kb on - strand, within GFF4611at 254.174 kb on + strand, within GFF4611at 254.174 kb on + strand, within GFF4611at 254.174 kb on + strand, within GFF4611at 254.174 kb on + strand, within GFF4611at 254.174 kb on + strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.175 kb on - strand, within GFF4611at 254.303 kb on + strand, within GFF4611at 254.304 kb on - strand, within GFF4611at 254.304 kb on - strand, within GFF4611at 254.304 kb on - strand, within GFF4611

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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250,979 + GFF4608 0.81 -0.2
250,979 + GFF4608 0.81 +0.3
250,979 + GFF4608 0.81 +0.8
250,979 + GFF4608 0.81 +0.1
250,980 - GFF4608 0.81 -0.8
250,980 - GFF4608 0.81 +0.4
251,123 + GFF4608 0.87 -2.0
251,123 + GFF4608 0.87 -0.3
251,123 + GFF4608 0.87 +1.3
251,123 + GFF4608 0.87 -0.6
251,123 + GFF4608 0.87 -1.0
251,207 + -0.3
251,207 + +0.2
251,207 + -0.3
251,208 - -0.2
251,446 + +0.0
251,446 + -0.2
251,446 + -0.3
251,447 - +0.1
251,447 - +0.0
251,447 - -0.2
251,447 - +0.4
251,447 - -0.3
251,447 - +1.4
251,447 - +0.1
251,477 + +1.8
251,477 + -0.3
251,477 + +0.0
251,478 - +0.5
251,478 - +1.0
251,949 + -0.5
251,949 + -0.2
251,949 + -0.7
251,949 + +2.0
251,949 + -0.1
251,949 + -1.8
251,950 - +1.1
251,950 - +1.8
251,950 - -1.0
251,950 - +0.6
251,950 - +0.6
251,950 - -0.5
251,950 - -0.5
251,950 - -1.1
251,950 - +0.9
251,952 + -1.0
251,952 + +0.2
251,953 - +0.5
251,953 - +0.6
252,052 + -1.9
252,053 - -1.0
252,053 - -1.2
252,053 - +0.8
252,053 - -0.7
252,082 + -0.9
252,083 - -1.0
252,083 - -0.9
252,083 - -2.3
252,181 + GFF4610 0.12 -1.4
252,182 - GFF4610 0.12 -1.4
252,182 - GFF4610 0.12 -0.2
252,430 + GFF4610 0.26 -0.9
252,430 + GFF4610 0.26 +0.5
252,430 + GFF4610 0.26 +0.0
252,430 + GFF4610 0.26 -0.8
252,431 - GFF4610 0.26 -1.0
252,431 - GFF4610 0.26 -0.9
252,431 - GFF4610 0.26 +0.8
252,431 - GFF4610 0.26 -1.9
252,431 - GFF4610 0.26 -0.7
252,431 - GFF4610 0.26 -2.5
252,431 - GFF4610 0.26 -0.4
252,431 - GFF4610 0.26 -1.2
252,431 - GFF4610 0.26 -1.8
252,817 + GFF4610 0.48 -0.8
253,183 + GFF4610 0.68 +0.8
253,184 - GFF4610 0.68 -1.4
253,184 - GFF4610 0.68 +0.2
253,184 - GFF4610 0.68 +0.1
253,300 + GFF4610 0.75 +0.2
253,300 + GFF4610 0.75 +0.0
253,300 + GFF4610 0.75 +0.2
253,300 + GFF4610 0.75 -0.7
253,300 + GFF4610 0.75 -0.8
253,346 - GFF4610 0.77 +1.4
253,346 - GFF4610 0.77 -0.6
253,369 + GFF4610 0.79 -1.0
253,370 - GFF4610 0.79 -0.1
253,492 + GFF4610 0.85 -0.4
253,492 + GFF4610 0.85 -2.3
253,493 - GFF4610 0.85 +0.0
253,501 + GFF4610 0.86 -1.7
253,501 + GFF4610 0.86 -1.9
253,502 - GFF4610 0.86 -0.0
253,502 - GFF4610 0.86 -0.1
253,744 + +1.5
253,744 + +0.0
253,744 + -0.4
253,744 + -0.7
253,744 + -0.2
253,744 + -0.8
253,745 - -0.8
253,745 - +1.8
253,745 - -0.9
253,745 - -1.0
253,745 - -0.9
253,745 - -0.7
253,745 - -0.5
253,749 - -0.5
253,749 - -0.8
253,749 - -2.7
253,749 - -0.9
253,777 + -1.2
253,777 + +1.5
253,778 - -0.1
253,781 + -1.4
253,982 + GFF4611 0.22 +2.5
253,983 - GFF4611 0.23 +0.3
254,174 + GFF4611 0.50 -1.2
254,174 + GFF4611 0.50 +1.0
254,174 + GFF4611 0.50 -1.0
254,174 + GFF4611 0.50 +2.0
254,174 + GFF4611 0.50 -1.4
254,175 - GFF4611 0.50 -2.6
254,175 - GFF4611 0.50 +1.4
254,175 - GFF4611 0.50 +0.3
254,175 - GFF4611 0.50 -0.5
254,175 - GFF4611 0.50 +0.7
254,175 - GFF4611 0.50 -1.7
254,175 - GFF4611 0.50 +0.8
254,175 - GFF4611 0.50 -0.0
254,175 - GFF4611 0.50 +1.0
254,175 - GFF4611 0.50 -0.2
254,303 + GFF4611 0.68 +0.3
254,304 - GFF4611 0.69 -0.0
254,304 - GFF4611 0.69 -1.1
254,304 - GFF4611 0.69 -0.7

Or see this region's nucleotide sequence