Strain Fitness in Variovorax sp. SCN45 around GFF4569

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4568 and GFF4569 are separated by 31 nucleotidesGFF4569 and GFF4570 are separated by 10 nucleotides GFF4568 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 204,519 to 206,654 GFF4568 GFF4569 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 206,686 to 207,876 GFF4569 GFF4570 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 207,887 to 209,095 GFF4570 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.782 kb on + strand, within GFF4568at 205.782 kb on + strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 206.055 kb on + strand, within GFF4568at 206.056 kb on - strand, within GFF4568at 206.188 kb on - strand, within GFF4568at 206.250 kb on + strand, within GFF4568at 206.251 kb on - strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.379 kb on + strand, within GFF4568at 206.379 kb on + strand, within GFF4568at 206.380 kb on - strand, within GFF4568at 206.380 kb on - strand, within GFF4568at 206.466 kb on + strandat 206.466 kb on + strandat 206.467 kb on - strandat 206.467 kb on - strandat 206.472 kb on + strandat 206.508 kb on + strandat 206.508 kb on + strandat 206.509 kb on - strandat 206.509 kb on - strandat 206.652 kb on + strandat 206.653 kb on - strandat 206.653 kb on - strandat 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.169 kb on + strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.250 kb on + strand, within GFF4569at 207.251 kb on - strand, within GFF4569at 207.370 kb on + strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.670 kb on + strand, within GFF4569at 207.671 kb on - strand, within GFF4569at 207.811 kb on + strandat 207.811 kb on + strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.871 kb on + strandat 207.872 kb on - strandat 208.196 kb on + strand, within GFF4570at 208.196 kb on + strand, within GFF4570at 208.197 kb on - strand, within GFF4570at 208.269 kb on - strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.349 kb on + strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.350 kb on - strand, within GFF4570at 208.507 kb on + strand, within GFF4570at 208.507 kb on + strand, within GFF4570at 208.508 kb on - strand, within GFF4570at 208.613 kb on + strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.614 kb on - strand, within GFF4570at 208.625 kb on + strand, within GFF4570at 208.626 kb on - strand, within GFF4570at 208.626 kb on - strand, within GFF4570at 208.626 kb on - strand, within GFF4570

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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205,782 + GFF4568 0.59 +0.4
205,782 + GFF4568 0.59 +0.1
205,783 - GFF4568 0.59 -0.6
205,783 - GFF4568 0.59 -0.7
205,783 - GFF4568 0.59 -0.4
205,783 - GFF4568 0.59 +0.4
205,783 - GFF4568 0.59 +0.4
206,055 + GFF4568 0.72 -0.5
206,056 - GFF4568 0.72 +0.0
206,188 - GFF4568 0.78 -0.2
206,250 + GFF4568 0.81 +0.1
206,251 - GFF4568 0.81 +0.1
206,253 + GFF4568 0.81 -0.2
206,253 + GFF4568 0.81 +0.8
206,253 + GFF4568 0.81 +0.1
206,253 + GFF4568 0.81 -0.5
206,253 + GFF4568 0.81 +0.1
206,254 - GFF4568 0.81 -0.8
206,254 - GFF4568 0.81 +0.9
206,254 - GFF4568 0.81 -0.7
206,254 - GFF4568 0.81 -1.8
206,254 - GFF4568 0.81 -0.2
206,379 + GFF4568 0.87 +0.0
206,379 + GFF4568 0.87 +1.4
206,380 - GFF4568 0.87 +0.7
206,380 - GFF4568 0.87 -0.5
206,466 + -0.2
206,466 + +0.6
206,467 - -0.3
206,467 - +0.8
206,472 + -0.8
206,508 + -0.5
206,508 + -0.7
206,509 - +0.2
206,509 - -1.0
206,652 + -0.5
206,653 - -0.5
206,653 - +0.5
207,127 + GFF4569 0.37 -1.4
207,127 + GFF4569 0.37 +0.8
207,127 + GFF4569 0.37 +0.3
207,127 + GFF4569 0.37 +0.1
207,127 + GFF4569 0.37 +0.0
207,127 + GFF4569 0.37 +1.7
207,127 + GFF4569 0.37 +1.5
207,127 + GFF4569 0.37 +0.6
207,127 + GFF4569 0.37 -2.0
207,127 + GFF4569 0.37 +0.9
207,127 + GFF4569 0.37 +1.6
207,128 - GFF4569 0.37 +0.8
207,128 - GFF4569 0.37 -0.5
207,128 - GFF4569 0.37 -0.5
207,128 - GFF4569 0.37 -0.1
207,128 - GFF4569 0.37 -0.6
207,169 + GFF4569 0.41 -0.1
207,170 - GFF4569 0.41 -0.8
207,170 - GFF4569 0.41 +0.7
207,250 + GFF4569 0.47 -1.5
207,251 - GFF4569 0.47 +0.1
207,370 + GFF4569 0.57 +0.2
207,371 - GFF4569 0.58 +0.2
207,371 - GFF4569 0.58 -0.4
207,371 - GFF4569 0.58 -0.3
207,371 - GFF4569 0.58 +3.0
207,371 - GFF4569 0.58 +0.2
207,371 - GFF4569 0.58 -0.6
207,670 + GFF4569 0.83 -1.0
207,670 + GFF4569 0.83 +1.2
207,670 + GFF4569 0.83 -0.5
207,671 - GFF4569 0.83 -0.2
207,811 + +0.5
207,811 + -0.2
207,812 - -0.3
207,812 - +1.4
207,871 + +0.3
207,872 - -1.7
208,196 + GFF4570 0.26 -2.4
208,196 + GFF4570 0.26 +0.1
208,197 - GFF4570 0.26 +0.0
208,269 - GFF4570 0.32 +1.0
208,349 + GFF4570 0.38 +0.4
208,349 + GFF4570 0.38 -1.9
208,349 + GFF4570 0.38 +0.4
208,350 - GFF4570 0.38 -1.6
208,350 - GFF4570 0.38 -1.0
208,350 - GFF4570 0.38 -0.2
208,350 - GFF4570 0.38 +0.2
208,350 - GFF4570 0.38 -0.3
208,350 - GFF4570 0.38 +0.7
208,350 - GFF4570 0.38 -0.5
208,350 - GFF4570 0.38 +0.1
208,507 + GFF4570 0.51 -0.4
208,507 + GFF4570 0.51 -1.4
208,508 - GFF4570 0.51 -1.8
208,613 + GFF4570 0.60 +0.2
208,614 - GFF4570 0.60 -0.6
208,614 - GFF4570 0.60 -0.5
208,614 - GFF4570 0.60 +0.1
208,625 + GFF4570 0.61 +2.8
208,626 - GFF4570 0.61 -0.2
208,626 - GFF4570 0.61 +0.8
208,626 - GFF4570 0.61 -0.7

Or see this region's nucleotide sequence