Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4450 and GFF4451 are separated by 32 nucleotides GFF4451 and GFF4452 are separated by 6 nucleotides
GFF4450 - Rod shape-determining protein RodA, at 89,744 to 90,898
GFF4450
GFF4451 - Permease of the drug/metabolite transporter (DMT) superfamily, at 90,931 to 92,772
GFF4451
GFF4452 - Two-component transcriptional response regulator, LuxR family, at 92,779 to 93,537
GFF4452
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.043 kb on + strand at 91.043 kb on + strand at 91.044 kb on - strand at 91.044 kb on - strand at 91.156 kb on + strand, within GFF4451 at 91.156 kb on + strand, within GFF4451 at 91.231 kb on + strand, within GFF4451 at 91.272 kb on - strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.517 kb on + strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.518 kb on - strand, within GFF4451 at 91.655 kb on + strand, within GFF4451 at 91.656 kb on - strand, within GFF4451 at 91.680 kb on - strand, within GFF4451 at 92.010 kb on - strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.120 kb on + strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.121 kb on - strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.249 kb on + strand, within GFF4451 at 92.250 kb on + strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.250 kb on - strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.392 kb on + strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.393 kb on - strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.396 kb on + strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.397 kb on - strand, within GFF4451 at 92.414 kb on + strand, within GFF4451 at 92.415 kb on - strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.447 kb on + strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.448 kb on - strand, within GFF4451 at 92.603 kb on + strand at 92.603 kb on + strand at 92.603 kb on + strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 92.925 kb on - strand, within GFF4452 at 93.074 kb on + strand, within GFF4452 at 93.075 kb on - strand, within GFF4452 at 93.075 kb on - strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.182 kb on + strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.183 kb on - strand, within GFF4452 at 93.519 kb on + strand at 93.520 kb on - strand at 93.537 kb on + strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.538 kb on - strand at 93.573 kb on - strand at 93.634 kb on + strand at 93.686 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.697 kb on + strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.698 kb on - strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.732 kb on + strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.733 kb on - strand at 93.737 kb on + strand at 93.737 kb on + strand at 93.738 kb on - strand at 93.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 91,043 + -1.0 91,043 + +1.5 91,044 - -1.0 91,044 - -1.2 91,156 + GFF4451 0.12 -1.0 91,156 + GFF4451 0.12 -0.3 91,231 + GFF4451 0.16 +0.4 91,272 - GFF4451 0.19 +0.2 91,517 + GFF4451 0.32 -0.4 91,517 + GFF4451 0.32 -0.2 91,517 + GFF4451 0.32 +0.4 91,517 + GFF4451 0.32 +0.0 91,517 + GFF4451 0.32 -0.1 91,517 + GFF4451 0.32 -0.4 91,517 + GFF4451 0.32 -2.1 91,518 - GFF4451 0.32 +1.0 91,518 - GFF4451 0.32 +0.4 91,518 - GFF4451 0.32 -0.5 91,518 - GFF4451 0.32 -0.2 91,518 - GFF4451 0.32 -0.1 91,518 - GFF4451 0.32 -1.2 91,518 - GFF4451 0.32 -0.6 91,518 - GFF4451 0.32 -0.5 91,518 - GFF4451 0.32 +0.2 91,518 - GFF4451 0.32 -1.3 91,518 - GFF4451 0.32 -2.1 91,518 - GFF4451 0.32 +0.2 91,518 - GFF4451 0.32 +0.8 91,655 + GFF4451 0.39 -1.6 91,656 - GFF4451 0.39 -0.1 91,680 - GFF4451 0.41 -0.2 92,010 - GFF4451 0.59 -1.0 92,120 + GFF4451 0.65 -0.7 92,120 + GFF4451 0.65 -0.3 92,120 + GFF4451 0.65 -0.8 92,120 + GFF4451 0.65 -0.2 92,120 + GFF4451 0.65 +1.0 92,121 - GFF4451 0.65 -0.0 92,121 - GFF4451 0.65 -0.6 92,121 - GFF4451 0.65 -1.1 92,249 + GFF4451 0.72 -1.0 92,249 + GFF4451 0.72 -1.4 92,249 + GFF4451 0.72 -0.2 92,250 + GFF4451 0.72 -1.0 92,250 - GFF4451 0.72 +0.6 92,250 - GFF4451 0.72 -1.4 92,250 - GFF4451 0.72 -1.0 92,392 + GFF4451 0.79 -0.2 92,392 + GFF4451 0.79 -0.2 92,392 + GFF4451 0.79 +1.2 92,392 + GFF4451 0.79 -1.0 92,392 + GFF4451 0.79 +0.2 92,392 + GFF4451 0.79 +0.4 92,393 - GFF4451 0.79 -0.2 92,393 - GFF4451 0.79 -0.2 92,393 - GFF4451 0.79 +0.2 92,393 - GFF4451 0.79 +1.0 92,393 - GFF4451 0.79 -1.4 92,393 - GFF4451 0.79 -0.3 92,393 - GFF4451 0.79 -0.9 92,393 - GFF4451 0.79 -0.0 92,393 - GFF4451 0.79 +0.5 92,396 + GFF4451 0.80 -2.5 92,396 + GFF4451 0.80 +0.0 92,396 + GFF4451 0.80 -0.3 92,396 + GFF4451 0.80 +0.5 92,396 + GFF4451 0.80 +0.1 92,396 + GFF4451 0.80 -1.2 92,396 + GFF4451 0.80 -0.8 92,396 + GFF4451 0.80 +0.0 92,396 + GFF4451 0.80 -1.7 92,396 + GFF4451 0.80 -0.6 92,396 + GFF4451 0.80 -0.4 92,396 + GFF4451 0.80 -1.2 92,396 + GFF4451 0.80 +0.4 92,396 + GFF4451 0.80 +0.5 92,397 - GFF4451 0.80 +0.5 92,397 - GFF4451 0.80 +0.2 92,397 - GFF4451 0.80 -3.0 92,397 - GFF4451 0.80 -1.3 92,397 - GFF4451 0.80 -0.6 92,397 - GFF4451 0.80 -0.3 92,397 - GFF4451 0.80 +1.1 92,397 - GFF4451 0.80 -0.5 92,397 - GFF4451 0.80 -1.3 92,414 + GFF4451 0.81 -0.3 92,415 - GFF4451 0.81 -0.8 92,447 + GFF4451 0.82 -1.4 92,447 + GFF4451 0.82 -0.2 92,447 + GFF4451 0.82 +0.6 92,447 + GFF4451 0.82 -1.3 92,447 + GFF4451 0.82 +0.2 92,448 - GFF4451 0.82 -0.5 92,448 - GFF4451 0.82 +0.3 92,448 - GFF4451 0.82 -0.6 92,448 - GFF4451 0.82 -0.8 92,448 - GFF4451 0.82 -1.6 92,603 + +0.3 92,603 + +0.2 92,603 + +0.0 92,604 - +0.9 92,604 - +1.2 92,604 - -0.6 92,604 - -0.8 92,925 - GFF4452 0.19 -0.5 92,925 - GFF4452 0.19 -0.1 92,925 - GFF4452 0.19 -0.2 92,925 - GFF4452 0.19 +1.0 93,074 + GFF4452 0.39 -0.7 93,075 - GFF4452 0.39 -1.2 93,075 - GFF4452 0.39 -0.4 93,182 + GFF4452 0.53 -0.0 93,182 + GFF4452 0.53 -0.5 93,182 + GFF4452 0.53 +0.2 93,183 - GFF4452 0.53 -0.6 93,183 - GFF4452 0.53 -1.7 93,183 - GFF4452 0.53 -1.2 93,183 - GFF4452 0.53 +0.2 93,183 - GFF4452 0.53 -0.8 93,519 + +0.2 93,520 - -2.4 93,537 + -0.2 93,538 - -0.0 93,538 - +0.9 93,538 - +0.5 93,538 - +0.5 93,538 - -0.3 93,538 - -1.4 93,573 - +0.4 93,634 + +0.0 93,686 + +0.6 93,697 + -0.3 93,697 + -0.1 93,697 + +0.2 93,697 + -2.0 93,697 + -0.9 93,698 - -0.2 93,698 - -0.4 93,698 - +0.2 93,698 - -0.5 93,732 + -0.2 93,732 + -0.8 93,732 + +1.8 93,732 + +0.5 93,733 - -0.3 93,733 - +2.0 93,733 - -0.7 93,733 - +0.1 93,733 - -1.5 93,733 - -0.2 93,737 + -0.5 93,737 + -0.6 93,738 - -0.4 93,738 - +0.1
Or see this region's nucleotide sequence