Strain Fitness in Variovorax sp. SCN45 around GFF4402

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
33,990	+		GFF4399	0.79	-0.0
33,990	+		GFF4399	0.79	-0.5
33,991	-		GFF4399	0.79	-0.5
34,120	+				-0.3
34,120	+				-0.5
34,120	+				+0.1
34,120	+				+0.5
34,121	-				+0.3
34,121	-				+0.7
34,121	-				-0.3
34,121	-				-1.0
34,121	-				-0.6
34,447	+		GFF4400	0.67	-0.6
34,514	+		GFF4400	0.83	-1.7
34,514	+		GFF4400	0.83	-0.4
34,514	+		GFF4400	0.83	+0.5
34,514	+		GFF4400	0.83	-0.3
34,514	+		GFF4400	0.83	+0.2
34,514	+		GFF4400	0.83	-0.6
34,514	+		GFF4400	0.83	+0.2
34,514	+		GFF4400	0.83	+1.3
34,515	-		GFF4400	0.83	-0.2
34,515	-		GFF4400	0.83	-0.7
34,515	-		GFF4400	0.83	-0.6
34,515	-		GFF4400	0.83	-1.2
34,515	-		GFF4400	0.83	+0.6
34,515	-		GFF4400	0.83	+0.2
34,515	-		GFF4400	0.83	-1.8
34,515	-		GFF4400	0.83	-0.4
34,515	-		GFF4400	0.83	-0.5
34,515	-		GFF4400	0.83	-0.5
34,515	-		GFF4400	0.83	-0.3
34,515	-		GFF4400	0.83	-0.2
34,515	-		GFF4400	0.83	-0.5
34,515	-		GFF4400	0.83	-1.6
34,515	-		GFF4400	0.83	-0.3
34,515	-		GFF4400	0.83	-0.8
34,567	+				+1.0
34,567	+				-0.3
34,567	+				-0.2
34,567	+				+0.4
34,567	+				-0.3
34,567	+				-1.4
34,567	+				+0.7
34,567	+				+0.5
34,567	+				-0.2
34,567	+				-0.2
34,567	+				-0.4
34,567	+				-0.6
34,567	+				+0.7
34,567	+				-2.4
34,567	+				+0.9
34,567	+				+0.4
34,567	+				+1.2
34,567	+				+0.1
34,567	+				-0.2
34,567	+				-0.0
34,567	+				-0.3
34,567	+				+0.2
34,567	+				+0.5
34,567	+				-0.1
34,567	+				+0.1
34,567	+				-0.0
34,567	+				-1.0
34,567	+				+0.1
34,567	+				-0.3
34,567	+				+0.1
34,567	+				-0.2
34,567	+				-0.3
34,567	+				+0.3
34,568	-				-0.2
34,568	-				-1.2
34,568	-				+0.0
34,568	-				+1.3
34,568	-				-0.0
34,568	-				+0.5
34,568	-				+0.2
34,568	-				+0.9
34,568	-				-1.2
34,568	-				-1.3
34,568	-				-0.5
34,568	-				-0.4
34,568	-				-0.5
34,568	-				-0.7
34,568	-				-2.0
34,568	-				+0.4
34,568	-				-0.9
34,568	-				-0.2
34,568	-				+0.1
34,568	-				-0.0
34,568	-				+1.8
34,568	-				+0.8
34,568	-				-0.3
34,568	-				+1.8
34,568	-				+0.2
34,568	-				+0.6
34,582	+				-0.3
34,582	+				-1.0
34,582	+				+0.6
34,582	+				-1.4
34,582	+				-0.1
34,582	+				-0.4
34,582	+				-2.0
34,582	+				-0.2
34,583	-				+0.9
34,583	-				-0.5
34,583	-				-1.1
34,583	-				+0.6
34,583	-				+0.4
34,583	-				+0.1
34,583	-				-1.0
34,583	-				+0.6
34,583	-				-0.6
34,591	+				-0.3
34,592	-				-0.8
34,597	+				-0.2
34,597	+				+1.6
34,597	+				+0.0
34,597	+				+1.2
34,597	+				-0.5
34,598	-				-0.8
34,598	-				-0.3
34,598	-				-0.4
34,598	-				+1.4
34,598	-				-0.3
34,598	-				+0.0
34,598	-				+1.0
34,611	+				-0.0
34,611	+				-0.7
34,611	+				+0.6
34,612	-				-1.0
34,612	-				+0.1
34,711	+		GFF4401	0.26	+1.4
34,711	+		GFF4401	0.26	-0.4
34,711	+		GFF4401	0.26	-0.4
34,711	+		GFF4401	0.26	+0.5
34,711	+		GFF4401	0.26	+0.2
34,711	+		GFF4401	0.26	-0.2
34,711	+		GFF4401	0.26	+0.2
34,711	+		GFF4401	0.26	+1.4
34,711	+		GFF4401	0.26	+0.1
34,711	+		GFF4401	0.26	-0.9
34,711	+		GFF4401	0.26	-2.1
34,712	-		GFF4401	0.26	+0.5
34,712	-		GFF4401	0.26	-0.1
34,712	-		GFF4401	0.26	-2.0
34,712	-		GFF4401	0.26	-0.9
34,712	-		GFF4401	0.26	-0.1
34,712	-		GFF4401	0.26	-1.7
34,712	-		GFF4401	0.26	-0.9
34,712	-		GFF4401	0.26	+0.6
34,712	-		GFF4401	0.26	-0.7
34,712	-		GFF4401	0.26	+0.4
34,776	+		GFF4401	0.55	+0.3
34,776	+		GFF4401	0.55	-0.1
34,776	+		GFF4401	0.55	-0.3
34,776	+		GFF4401	0.55	+0.1
34,776	+		GFF4401	0.55	-0.4
34,776	+		GFF4401	0.55	+0.4
34,777	-		GFF4401	0.56	-0.3
34,777	-		GFF4401	0.56	+0.2
34,799	+		GFF4401	0.66	-1.8
34,799	+		GFF4401	0.66	-2.0
34,799	+		GFF4401	0.66	-1.4
34,799	+		GFF4401	0.66	-0.8
34,799	+		GFF4401	0.66	+0.4
34,799	+		GFF4401	0.66	-1.9
34,799	+		GFF4401	0.66	-1.8
34,799	+		GFF4401	0.66	-0.2
34,799	+		GFF4401	0.66	-0.4
34,799	+		GFF4401	0.66	-0.6
34,799	+		GFF4401	0.66	-1.6
34,799	+		GFF4401	0.66	-2.4
34,799	+		GFF4401	0.66	-0.4
34,799	+		GFF4401	0.66	-0.1
34,799	+		GFF4401	0.66	+0.1
34,799	+		GFF4401	0.66	+0.4
34,800	-		GFF4401	0.66	+0.7
34,800	-		GFF4401	0.66	-1.8
34,800	-		GFF4401	0.66	+0.2
34,800	-		GFF4401	0.66	-0.1
34,800	-		GFF4401	0.66	-0.4
34,800	-		GFF4401	0.66	+1.8
34,800	-		GFF4401	0.66	-0.8
34,800	-		GFF4401	0.66	-0.2
34,800	-		GFF4401	0.66	+1.5
34,800	-		GFF4401	0.66	-0.0
34,800	-		GFF4401	0.66	-0.2
34,800	-		GFF4401	0.66	+0.5
34,800	-		GFF4401	0.66	-0.7
34,800	-		GFF4401	0.66	+2.8
34,800	-		GFF4401	0.66	+0.1
34,800	-		GFF4401	0.66	-0.7
34,800	-		GFF4401	0.66	-0.0
34,800	-		GFF4401	0.66	-1.1
34,832	+		GFF4401	0.81	-0.1
34,832	+		GFF4401	0.81	+0.4
34,832	+		GFF4401	0.81	-0.3
34,832	+		GFF4401	0.81	-0.8
34,832	+		GFF4401	0.81	-0.5
34,832	+		GFF4401	0.81	+0.2
34,832	+		GFF4401	0.81	-0.1
34,832	+		GFF4401	0.81	+0.4
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	-0.5
34,832	+		GFF4401	0.81	+0.6
34,832	+		GFF4401	0.81	-0.8
34,832	+		GFF4401	0.81	-0.7
34,832	+		GFF4401	0.81	-1.2
34,832	+		GFF4401	0.81	-0.2
34,832	+		GFF4401	0.81	+0.0
34,832	+		GFF4401	0.81	+2.1
34,832	+		GFF4401	0.81	+0.7
34,832	+		GFF4401	0.81	-0.2
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	-0.7
34,832	+		GFF4401	0.81	-0.3
34,832	+		GFF4401	0.81	-1.7
34,832	+		GFF4401	0.81	+1.1
34,832	+		GFF4401	0.81	-0.0
34,832	+		GFF4401	0.81	+0.2
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	-1.0
34,832	+		GFF4401	0.81	-1.7
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	+0.1
34,832	+		GFF4401	0.81	+0.5
34,832	+		GFF4401	0.81	+1.1
34,832	+		GFF4401	0.81	-1.9
34,832	+		GFF4401	0.81	+0.3
34,832	+		GFF4401	0.81	+0.3
34,832	+		GFF4401	0.81	+0.0
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-0.1
34,832	+		GFF4401	0.81	-0.7
34,832	+		GFF4401	0.81	+0.4
34,832	+		GFF4401	0.81	+0.6
34,832	+		GFF4401	0.81	-0.8
34,832	+		GFF4401	0.81	-0.6
34,832	+		GFF4401	0.81	-1.0
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-0.5
34,832	+		GFF4401	0.81	-0.2
34,832	+		GFF4401	0.81	-0.5
34,832	+		GFF4401	0.81	-0.9
34,832	+		GFF4401	0.81	+0.6
34,832	+		GFF4401	0.81	-0.4
34,832	+		GFF4401	0.81	-0.2
34,833	-		GFF4401	0.81	-0.6
34,833	-		GFF4401	0.81	+0.3
34,833	-		GFF4401	0.81	-0.0
34,833	-		GFF4401	0.81	-0.1
34,833	-		GFF4401	0.81	+0.0
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	+1.0
34,833	-		GFF4401	0.81	-0.5
34,833	-		GFF4401	0.81	-1.7
34,833	-		GFF4401	0.81	-1.2
34,833	-		GFF4401	0.81	-0.7
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	-0.7
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	-1.0
34,833	-		GFF4401	0.81	+0.0
34,833	-		GFF4401	0.81	+0.3
34,833	-		GFF4401	0.81	+0.8
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	+0.6
34,833	-		GFF4401	0.81	-0.4
34,833	-		GFF4401	0.81	-0.1
34,833	-		GFF4401	0.81	-0.8
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	-1.2
34,833	-		GFF4401	0.81	+0.3
34,833	-		GFF4401	0.81	+0.1
34,833	-		GFF4401	0.81	+0.0
34,833	-		GFF4401	0.81	-0.3
34,833	-		GFF4401	0.81	-0.6
34,833	-		GFF4401	0.81	+0.2
34,833	-		GFF4401	0.81	-0.5
34,833	-		GFF4401	0.81	-0.1
34,833	-		GFF4401	0.81	+0.6
34,833	-		GFF4401	0.81	+0.5
34,833	-		GFF4401	0.81	-1.4
34,833	-		GFF4401	0.81	+1.8
34,833	-		GFF4401	0.81	-0.4
34,833	-		GFF4401	0.81	-0.2
34,833	-		GFF4401	0.81	-2.1
34,840	+		GFF4401	0.84	-1.1
34,840	+		GFF4401	0.84	-0.4
34,840	+		GFF4401	0.84	+0.0
34,841	-		GFF4401	0.85	-1.3
34,871	+				+0.1
34,872	-				-0.3
34,872	-				-0.9
34,878	+				-0.4
34,878	+				-0.6
34,878	+				-0.2
34,878	+				-1.4
34,878	+				-0.5
34,878	+				-0.2
34,878	+				+0.2
34,878	+				-0.0
34,879	-				+0.8
34,879	-				+0.5
34,879	-				-0.0
34,879	-				-0.5
34,879	-				+0.7
34,879	-				+0.9
34,879	-				-1.8
34,879	-				-0.7
34,916	-				+0.0
34,916	-				+0.8
34,916	-				-1.2
34,947	+				-0.8
34,947	+				+0.0
34,947	+				+1.1
34,947	+				-0.8
34,947	+				-0.6
34,947	+				-0.5
34,947	+				-0.7
34,947	+				-0.0
34,947	+				-0.5
34,947	+				-1.4
34,947	+				+0.2
34,947	+				+1.5
34,947	+				-0.4
34,947	+				+0.7
34,947	+				+1.8
34,947	+				-0.2
34,947	+				-0.2
34,947	+				+0.3
34,947	+				+0.2
34,947	+				-0.2
34,947	+				-0.3
34,947	+				-0.2
34,947	+				+0.8
34,948	-				+0.2
34,948	-				-0.4
34,948	-				-1.4
34,948	-				-0.8
34,948	-				-0.2
34,948	-				-2.6
34,948	-				-1.0
34,948	-				+0.3
34,948	-				-0.7
34,948	-				+0.0
34,948	-				+0.4
34,948	-				-0.0
34,948	-				-0.9
34,948	-				+0.6
34,948	-				-0.1
34,948	-				+1.0
35,059	+		GFF4402	0.29	-0.7
35,059	+		GFF4402	0.29	-1.1
35,059	+		GFF4402	0.29	-1.0
35,059	+		GFF4402	0.29	-2.2
35,059	+		GFF4402	0.29	-1.3
35,059	+		GFF4402	0.29	+0.2
35,059	+		GFF4402	0.29	+1.0
35,059	+		GFF4402	0.29	+0.0
35,059	+		GFF4402	0.29	+0.2
35,060	-		GFF4402	0.30	-0.2
35,060	-		GFF4402	0.30	+0.1
35,060	-		GFF4402	0.30	-0.9
35,060	-		GFF4402	0.30	-3.3
35,060	-		GFF4402	0.30	+0.2
35,411	+		GFF4403	0.35	-0.2
35,411	+		GFF4403	0.35	+0.1
35,411	+		GFF4403	0.35	-0.8
35,411	+		GFF4403	0.35	-0.2
35,411	+		GFF4403	0.35	-1.7
35,411	+		GFF4403	0.35	+0.5
35,411	+		GFF4403	0.35	-0.5
35,411	+		GFF4403	0.35	+0.4
35,411	+		GFF4403	0.35	-0.2
35,411	+		GFF4403	0.35	+0.2
35,412	-		GFF4403	0.35	+1.6
35,412	-		GFF4403	0.35	-0.2
35,412	-		GFF4403	0.35	+0.2
35,412	-		GFF4403	0.35	-2.2
35,412	-		GFF4403	0.35	-1.1
35,412	-		GFF4403	0.35	+1.3
35,412	-		GFF4403	0.35	-1.7
35,412	-		GFF4403	0.35	-0.3
35,412	-		GFF4403	0.35	-2.4
35,444	+		GFF4403	0.45	+0.3
35,942	+		GFF4404	0.15	+0.4
35,983	-		GFF4404	0.18	-1.5
35,983	-		GFF4404	0.18	+1.8
36,118	+		GFF4404	0.27	-0.6
36,118	+		GFF4404	0.27	-1.4
36,118	+		GFF4404	0.27	-0.7
36,118	+		GFF4404	0.27	-1.7
36,118	+		GFF4404	0.27	+0.2
36,118	+		GFF4404	0.27	-1.0
36,118	+		GFF4404	0.27	+0.1
36,118	+		GFF4404	0.27	-0.2
36,118	+		GFF4404	0.27	+0.8
36,118	+		GFF4404	0.27	-0.3
36,118	+		GFF4404	0.27	+0.3
36,118	+		GFF4404	0.27	-0.9
36,118	+		GFF4404	0.27	-0.6
36,118	+		GFF4404	0.27	-1.0
36,118	+		GFF4404	0.27	-1.7
36,118	+		GFF4404	0.27	+0.1
36,118	+		GFF4404	0.27	+0.2
36,118	+		GFF4404	0.27	+0.4
36,118	+		GFF4404	0.27	+1.6
36,118	+		GFF4404	0.27	+0.1
36,118	+		GFF4404	0.27	-0.7
36,118	+		GFF4404	0.27	-0.4
36,118	+		GFF4404	0.27	-1.3
36,118	+		GFF4404	0.27	-1.8
36,118	+		GFF4404	0.27	-0.2
36,118	+		GFF4404	0.27	-0.6
36,119	-		GFF4404	0.27	+0.8
36,119	-		GFF4404	0.27	+0.4
36,119	-		GFF4404	0.27	-0.8
36,119	-		GFF4404	0.27	-0.7
36,119	-		GFF4404	0.27	-0.4
36,119	-		GFF4404	0.27	-0.4
36,119	-		GFF4404	0.27	+0.2
36,119	-		GFF4404	0.27	-1.0
36,119	-		GFF4404	0.27	-0.0
36,119	-		GFF4404	0.27	+0.2
36,119	-		GFF4404	0.27	+0.0
36,119	-		GFF4404	0.27	-1.0
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