Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4240 and GFF4241 overlap by 1 nucleotides GFF4241 and GFF4242 overlap by 4 nucleotides
GFF4240 - Integral membrane protein, at 151,154 to 152,875
GFF4240
GFF4241 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 152,875 to 155,901
GFF4241
GFF4242 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 155,898 to 156,944
GFF4242
Position (kb) 152
153
154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.932 kb on + strand, within GFF4240 at 151.933 kb on - strand, within GFF4240 at 151.933 kb on - strand, within GFF4240 at 152.442 kb on + strand, within GFF4240 at 152.443 kb on - strand, within GFF4240 at 152.478 kb on + strand, within GFF4240 at 152.479 kb on - strand, within GFF4240 at 152.523 kb on + strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.524 kb on - strand, within GFF4240 at 152.602 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.634 kb on + strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.635 kb on - strand, within GFF4240 at 152.742 kb on + strand at 152.743 kb on - strand at 152.743 kb on - strand at 152.808 kb on + strand at 152.808 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.909 kb on + strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.910 kb on - strand at 152.943 kb on - strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.146 kb on + strand at 153.147 kb on - strand at 153.147 kb on - strand at 153.716 kb on + strand, within GFF4241 at 153.717 kb on - strand, within GFF4241 at 153.717 kb on - strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.719 kb on + strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.720 kb on - strand, within GFF4241 at 153.831 kb on - strand, within GFF4241 at 154.172 kb on + strand, within GFF4241 at 154.173 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.420 kb on - strand, within GFF4241 at 154.604 kb on + strand, within GFF4241 at 154.604 kb on + strand, within GFF4241 at 154.605 kb on - strand, within GFF4241 at 154.692 kb on - strand, within GFF4241 at 155.861 kb on + strand at 155.861 kb on + strand at 155.862 kb on - strand at 155.862 kb on - strand at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.268 kb on + strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.269 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.383 kb on - strand, within GFF4242 at 156.508 kb on + strand, within GFF4242 at 156.509 kb on - strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.514 kb on + strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.515 kb on - strand, within GFF4242 at 156.539 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.566 kb on - strand, within GFF4242 at 156.649 kb on + strand, within GFF4242 at 156.770 kb on - strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.829 kb on + strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242 at 156.830 kb on - strand, within GFF4242
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 151,932 + GFF4240 0.45 +1.8 151,932 + GFF4240 0.45 -0.6 151,932 + GFF4240 0.45 +0.4 151,932 + GFF4240 0.45 -0.2 151,933 - GFF4240 0.45 -0.2 151,933 - GFF4240 0.45 -0.9 152,442 + GFF4240 0.75 +0.4 152,443 - GFF4240 0.75 +0.2 152,478 + GFF4240 0.77 +0.9 152,479 - GFF4240 0.77 -1.5 152,523 + GFF4240 0.80 -0.2 152,524 - GFF4240 0.80 +0.5 152,524 - GFF4240 0.80 -0.2 152,524 - GFF4240 0.80 +0.1 152,524 - GFF4240 0.80 +0.4 152,602 + GFF4240 0.84 -1.2 152,634 + GFF4240 0.86 -0.1 152,634 + GFF4240 0.86 -0.0 152,634 + GFF4240 0.86 -1.2 152,635 - GFF4240 0.86 -0.0 152,635 - GFF4240 0.86 +0.2 152,635 - GFF4240 0.86 -0.9 152,742 + +0.8 152,743 - +0.2 152,743 - -0.1 152,808 + -0.5 152,808 + +0.4 152,909 + -0.4 152,909 + +0.3 152,909 + -0.5 152,909 + -0.5 152,910 - -0.3 152,910 - -0.8 152,910 - -1.2 152,910 - +0.2 152,910 - -1.4 152,910 - +0.6 152,910 - +1.2 152,910 - +1.2 152,943 - -1.0 153,146 + +1.1 153,146 + +0.4 153,146 + +1.1 153,146 + -0.1 153,147 - -0.9 153,147 - -0.4 153,716 + GFF4241 0.28 -3.2 153,717 - GFF4241 0.28 +0.2 153,717 - GFF4241 0.28 -1.3 153,719 + GFF4241 0.28 -0.2 153,719 + GFF4241 0.28 +0.8 153,719 + GFF4241 0.28 -0.2 153,719 + GFF4241 0.28 +0.3 153,719 + GFF4241 0.28 +1.4 153,719 + GFF4241 0.28 -0.3 153,719 + GFF4241 0.28 -0.4 153,719 + GFF4241 0.28 +1.1 153,719 + GFF4241 0.28 -0.2 153,719 + GFF4241 0.28 -0.5 153,720 - GFF4241 0.28 -3.7 153,720 - GFF4241 0.28 +0.1 153,720 - GFF4241 0.28 -1.4 153,720 - GFF4241 0.28 -1.8 153,720 - GFF4241 0.28 +0.1 153,720 - GFF4241 0.28 -1.0 153,831 - GFF4241 0.32 +0.2 154,172 + GFF4241 0.43 +0.2 154,173 - GFF4241 0.43 -0.1 154,420 - GFF4241 0.51 -0.3 154,420 - GFF4241 0.51 -0.5 154,420 - GFF4241 0.51 +0.8 154,420 - GFF4241 0.51 -1.4 154,604 + GFF4241 0.57 -0.5 154,604 + GFF4241 0.57 -0.3 154,605 - GFF4241 0.57 +1.4 154,692 - GFF4241 0.60 -0.1 155,861 + -2.2 155,861 + +0.3 155,862 - -0.1 155,862 - -0.2 156,268 + GFF4242 0.35 -0.4 156,268 + GFF4242 0.35 -1.8 156,268 + GFF4242 0.35 -0.6 156,268 + GFF4242 0.35 +1.0 156,268 + GFF4242 0.35 +0.5 156,269 - GFF4242 0.35 -0.2 156,269 - GFF4242 0.35 -2.2 156,269 - GFF4242 0.35 -0.7 156,269 - GFF4242 0.35 -1.4 156,269 - GFF4242 0.35 +0.8 156,383 - GFF4242 0.46 -0.8 156,383 - GFF4242 0.46 +0.3 156,383 - GFF4242 0.46 +0.4 156,383 - GFF4242 0.46 -1.4 156,508 + GFF4242 0.58 -0.8 156,509 - GFF4242 0.58 -0.5 156,514 + GFF4242 0.59 +0.5 156,514 + GFF4242 0.59 -0.9 156,514 + GFF4242 0.59 +0.6 156,514 + GFF4242 0.59 -1.3 156,514 + GFF4242 0.59 -0.2 156,514 + GFF4242 0.59 -0.3 156,514 + GFF4242 0.59 -0.5 156,514 + GFF4242 0.59 -1.0 156,514 + GFF4242 0.59 +1.1 156,514 + GFF4242 0.59 -0.1 156,514 + GFF4242 0.59 +0.2 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 -1.5 156,514 + GFF4242 0.59 -1.5 156,514 + GFF4242 0.59 -0.6 156,514 + GFF4242 0.59 +0.4 156,514 + GFF4242 0.59 +0.8 156,514 + GFF4242 0.59 -0.1 156,515 - GFF4242 0.59 +0.6 156,515 - GFF4242 0.59 +0.3 156,515 - GFF4242 0.59 +0.6 156,515 - GFF4242 0.59 -1.4 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 -0.0 156,515 - GFF4242 0.59 -0.3 156,515 - GFF4242 0.59 -1.3 156,515 - GFF4242 0.59 +0.1 156,515 - GFF4242 0.59 -0.5 156,515 - GFF4242 0.59 +3.2 156,515 - GFF4242 0.59 +0.1 156,515 - GFF4242 0.59 -0.9 156,515 - GFF4242 0.59 -0.2 156,515 - GFF4242 0.59 -0.3 156,539 - GFF4242 0.61 -0.7 156,566 - GFF4242 0.64 -1.4 156,566 - GFF4242 0.64 +0.9 156,649 + GFF4242 0.72 -0.0 156,770 - GFF4242 0.83 -0.6 156,829 + GFF4242 0.89 +0.0 156,829 + GFF4242 0.89 -0.1 156,830 - GFF4242 0.89 -1.9 156,830 - GFF4242 0.89 -1.1 156,830 - GFF4242 0.89 +0.4 156,830 - GFF4242 0.89 -2.0
Or see this region's nucleotide sequence