Strain Fitness in Variovorax sp. SCN45 around GFF39

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF37 and GFF38 are separated by 12 nucleotidesGFF38 and GFF39 are separated by 44 nucleotidesGFF39 and GFF40 are separated by 76 nucleotides GFF37 - Similar to Agmatine deiminase, at 40,242 to 41,195 GFF37 GFF38 - no description, at 41,208 to 41,465 GFF38 GFF39 - Transcriptional regulator, LysR family, at 41,510 to 42,370 GFF39 GFF40 - no description, at 42,447 to 43,592 GFF40 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.630 kb on + strand, within GFF37at 40.889 kb on + strand, within GFF37at 40.890 kb on - strand, within GFF37at 41.102 kb on - strandat 41.102 kb on - strandat 41.169 kb on + strandat 41.420 kb on + strand, within GFF38at 41.420 kb on + strand, within GFF38at 41.420 kb on + strand, within GFF38at 41.421 kb on - strand, within GFF38at 41.421 kb on - strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.423 kb on + strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.424 kb on - strand, within GFF38at 41.526 kb on + strandat 41.526 kb on + strandat 41.526 kb on + strandat 41.526 kb on + strandat 41.527 kb on - strandat 41.527 kb on - strandat 41.527 kb on - strandat 41.623 kb on - strand, within GFF39at 41.739 kb on + strand, within GFF39at 41.740 kb on - strand, within GFF39at 41.740 kb on - strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.961 kb on + strand, within GFF39at 41.962 kb on - strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.096 kb on + strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.097 kb on - strand, within GFF39at 42.102 kb on + strand, within GFF39at 42.297 kb on + strandat 42.297 kb on + strandat 42.297 kb on + strandat 42.298 kb on - strandat 42.298 kb on - strandat 42.408 kb on + strandat 42.408 kb on + strandat 42.408 kb on + strandat 42.408 kb on + strandat 42.408 kb on + strandat 42.409 kb on - strandat 42.409 kb on - strandat 42.409 kb on - strandat 42.409 kb on - strandat 42.409 kb on - strandat 42.640 kb on + strand, within GFF40at 42.641 kb on - strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.715 kb on + strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.716 kb on - strand, within GFF40at 42.721 kb on + strand, within GFF40at 42.751 kb on - strand, within GFF40at 42.784 kb on + strand, within GFF40at 42.784 kb on + strand, within GFF40at 42.970 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.039 kb on + strand, within GFF40at 43.040 kb on - strand, within GFF40at 43.040 kb on - strand, within GFF40at 43.165 kb on + strand, within GFF40at 43.166 kb on - strand, within GFF40at 43.343 kb on - strand, within GFF40at 43.343 kb on - strand, within GFF40

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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40,630 + GFF37 0.41 +0.3
40,889 + GFF37 0.68 -0.2
40,890 - GFF37 0.68 +0.5
41,102 - +0.4
41,102 - +0.7
41,169 + -0.3
41,420 + GFF38 0.82 +0.8
41,420 + GFF38 0.82 -0.0
41,420 + GFF38 0.82 -0.3
41,421 - GFF38 0.83 +0.2
41,421 - GFF38 0.83 +0.8
41,423 + GFF38 0.83 +0.5
41,423 + GFF38 0.83 -0.2
41,423 + GFF38 0.83 -1.1
41,424 - GFF38 0.84 -0.8
41,424 - GFF38 0.84 +0.5
41,424 - GFF38 0.84 -0.7
41,424 - GFF38 0.84 -2.2
41,526 + -0.6
41,526 + -0.2
41,526 + -1.2
41,526 + -0.1
41,527 - -0.0
41,527 - +1.4
41,527 - -0.3
41,623 - GFF39 0.13 -0.0
41,739 + GFF39 0.27 -1.0
41,740 - GFF39 0.27 -2.2
41,740 - GFF39 0.27 +1.0
41,961 + GFF39 0.52 +0.1
41,961 + GFF39 0.52 -0.4
41,961 + GFF39 0.52 +0.3
41,962 - GFF39 0.52 -0.2
42,096 + GFF39 0.68 -1.5
42,096 + GFF39 0.68 -0.6
42,096 + GFF39 0.68 +0.3
42,096 + GFF39 0.68 -0.6
42,097 - GFF39 0.68 -0.6
42,097 - GFF39 0.68 -0.7
42,097 - GFF39 0.68 -1.8
42,097 - GFF39 0.68 -1.1
42,102 + GFF39 0.69 -0.7
42,297 + -0.0
42,297 + +1.0
42,297 + -0.6
42,298 - -1.3
42,298 - +0.8
42,408 + -1.7
42,408 + -2.1
42,408 + -1.0
42,408 + +0.4
42,408 + -0.4
42,409 - +0.7
42,409 - -2.2
42,409 - -0.6
42,409 - +0.7
42,409 - -0.1
42,640 + GFF40 0.17 +0.4
42,641 - GFF40 0.17 -0.0
42,715 + GFF40 0.23 -1.4
42,715 + GFF40 0.23 +0.2
42,715 + GFF40 0.23 +0.1
42,715 + GFF40 0.23 +0.1
42,715 + GFF40 0.23 +0.5
42,715 + GFF40 0.23 -0.3
42,716 - GFF40 0.23 -0.0
42,716 - GFF40 0.23 +0.1
42,716 - GFF40 0.23 -0.2
42,716 - GFF40 0.23 +1.1
42,716 - GFF40 0.23 -0.6
42,716 - GFF40 0.23 -0.3
42,716 - GFF40 0.23 +1.0
42,716 - GFF40 0.23 -1.6
42,721 + GFF40 0.24 -1.8
42,751 - GFF40 0.27 -0.8
42,784 + GFF40 0.29 -0.2
42,784 + GFF40 0.29 +0.1
42,970 + GFF40 0.46 +0.4
43,039 + GFF40 0.52 +0.6
43,039 + GFF40 0.52 -0.4
43,039 + GFF40 0.52 +0.1
43,039 + GFF40 0.52 +1.4
43,039 + GFF40 0.52 -1.4
43,039 + GFF40 0.52 -0.4
43,039 + GFF40 0.52 -0.4
43,039 + GFF40 0.52 +0.2
43,040 - GFF40 0.52 -0.5
43,040 - GFF40 0.52 -0.9
43,165 + GFF40 0.63 -0.4
43,166 - GFF40 0.63 -0.5
43,343 - GFF40 0.78 -1.0
43,343 - GFF40 0.78 -0.4

Or see this region's nucleotide sequence