Strain Fitness in Variovorax sp. SCN45 around GFF3842

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3841 and GFF3842 are separated by 7 nucleotidesGFF3842 and GFF3843 are separated by 6 nucleotides GFF3841 - Uncharacterized protein EC-HemX, at 39,202 to 40,296 GFF3841 GFF3842 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 40,304 to 41,587 GFF3842 GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162 GFF3843 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 39.378 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.042 kb on + strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.043 kb on - strand, within GFF3841at 40.159 kb on + strand, within GFF3841at 40.160 kb on - strand, within GFF3841at 40.160 kb on - strand, within GFF3841at 40.160 kb on - strand, within GFF3841at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.388 kb on - strand, within GFF3842at 41.484 kb on - strandat 41.484 kb on - strandat 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.947 kb on + strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 41.948 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.219 kb on - strand, within GFF3843at 42.237 kb on + strand, within GFF3843at 42.238 kb on - strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.294 kb on + strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.295 kb on - strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.306 kb on + strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.307 kb on - strand, within GFF3843at 42.394 kb on - strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.519 kb on + strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843at 42.520 kb on - strand, within GFF3843

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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39,378 + GFF3841 0.16 -0.2
40,042 + GFF3841 0.77 -1.8
40,042 + GFF3841 0.77 -0.2
40,042 + GFF3841 0.77 -0.0
40,042 + GFF3841 0.77 -0.0
40,042 + GFF3841 0.77 -0.3
40,042 + GFF3841 0.77 -1.8
40,042 + GFF3841 0.77 -1.5
40,042 + GFF3841 0.77 -0.8
40,042 + GFF3841 0.77 -0.3
40,042 + GFF3841 0.77 -0.6
40,043 - GFF3841 0.77 -1.7
40,043 - GFF3841 0.77 -0.8
40,043 - GFF3841 0.77 -1.5
40,043 - GFF3841 0.77 -0.9
40,043 - GFF3841 0.77 -0.4
40,043 - GFF3841 0.77 +0.7
40,043 - GFF3841 0.77 -1.0
40,043 - GFF3841 0.77 -0.5
40,159 + GFF3841 0.87 -0.1
40,160 - GFF3841 0.87 -2.5
40,160 - GFF3841 0.87 -2.1
40,160 - GFF3841 0.87 -0.8
41,388 - GFF3842 0.84 -1.3
41,388 - GFF3842 0.84 -0.7
41,388 - GFF3842 0.84 -0.7
41,388 - GFF3842 0.84 -0.2
41,484 - -0.1
41,484 - -1.5
41,947 + GFF3843 0.22 -0.9
41,947 + GFF3843 0.22 +0.1
41,947 + GFF3843 0.22 -0.6
41,947 + GFF3843 0.22 -0.1
41,948 - GFF3843 0.23 +0.7
41,948 - GFF3843 0.23 +0.1
41,948 - GFF3843 0.23 +1.0
42,219 - GFF3843 0.40 -0.9
42,219 - GFF3843 0.40 -0.1
42,219 - GFF3843 0.40 -0.7
42,219 - GFF3843 0.40 -0.4
42,237 + GFF3843 0.41 -0.8
42,238 - GFF3843 0.41 +0.2
42,294 + GFF3843 0.45 -0.2
42,294 + GFF3843 0.45 -0.6
42,294 + GFF3843 0.45 -0.4
42,295 - GFF3843 0.45 +1.0
42,295 - GFF3843 0.45 -1.5
42,295 - GFF3843 0.45 -0.1
42,295 - GFF3843 0.45 -0.2
42,295 - GFF3843 0.45 -1.0
42,295 - GFF3843 0.45 +0.3
42,295 - GFF3843 0.45 -1.2
42,306 + GFF3843 0.45 -0.2
42,306 + GFF3843 0.45 -0.9
42,306 + GFF3843 0.45 +0.3
42,306 + GFF3843 0.45 -0.7
42,307 - GFF3843 0.45 -0.8
42,307 - GFF3843 0.45 +0.3
42,307 - GFF3843 0.45 -0.6
42,307 - GFF3843 0.45 -0.7
42,307 - GFF3843 0.45 -1.0
42,394 - GFF3843 0.51 -0.3
42,519 + GFF3843 0.59 +0.7
42,519 + GFF3843 0.59 -1.0
42,519 + GFF3843 0.59 -0.8
42,519 + GFF3843 0.59 +1.3
42,519 + GFF3843 0.59 -0.1
42,519 + GFF3843 0.59 +0.4
42,520 - GFF3843 0.59 +0.8
42,520 - GFF3843 0.59 -0.1
42,520 - GFF3843 0.59 -0.0
42,520 - GFF3843 0.59 -0.2
42,520 - GFF3843 0.59 -0.1
42,520 - GFF3843 0.59 +0.1
42,520 - GFF3843 0.59 +0.1
42,520 - GFF3843 0.59 +0.6
42,520 - GFF3843 0.59 -0.1

Or see this region's nucleotide sequence