Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3836 and GFF3837 overlap by 4 nucleotides GFF3837 and GFF3838 are separated by 166 nucleotides GFF3838 and GFF3839 are separated by 115 nucleotides
GFF3836 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 26,019 to 34,184
GFF3836
GFF3837 - no description, at 34,181 to 34,399
GFF3837
GFF3838 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 34,566 to 37,409
GFF3838
GFF3839 - Porphobilinogen deaminase (EC 2.5.1.61), at 37,525 to 38,418
GFF3839
Position (kb) 34
35
36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 33.612 kb on + strand at 33.612 kb on + strand at 33.613 kb on - strand at 33.676 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.736 kb on + strand at 33.737 kb on + strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.737 kb on - strand at 33.754 kb on + strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.755 kb on - strand at 33.809 kb on - strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.811 kb on + strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.812 kb on - strand at 33.901 kb on + strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.902 kb on - strand at 33.932 kb on - strand at 34.378 kb on + strand at 34.416 kb on + strand at 34.476 kb on + strand at 34.477 kb on - strand at 34.477 kb on - strand at 34.486 kb on + strand at 34.487 kb on - strand at 34.515 kb on + strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.516 kb on - strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.699 kb on + strand at 34.700 kb on - strand at 34.700 kb on - strand at 34.862 kb on - strand, within GFF3838 at 34.904 kb on - strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.945 kb on + strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 34.946 kb on - strand, within GFF3838 at 35.188 kb on + strand, within GFF3838 at 35.188 kb on + strand, within GFF3838 at 35.189 kb on - strand, within GFF3838 at 35.251 kb on - strand, within GFF3838 at 35.371 kb on + strand, within GFF3838 at 35.371 kb on + strand, within GFF3838 at 35.455 kb on + strand, within GFF3838 at 35.456 kb on - strand, within GFF3838 at 35.456 kb on - strand, within GFF3838 at 35.456 kb on - strand, within GFF3838 at 35.578 kb on + strand, within GFF3838 at 35.579 kb on - strand, within GFF3838 at 35.630 kb on - strand, within GFF3838 at 35.695 kb on + strand, within GFF3838 at 35.696 kb on - strand, within GFF3838 at 35.696 kb on - strand, within GFF3838 at 35.872 kb on + strand, within GFF3838 at 35.873 kb on - strand, within GFF3838 at 35.873 kb on - strand, within GFF3838 at 35.873 kb on - strand, within GFF3838 at 35.959 kb on + strand, within GFF3838 at 35.959 kb on + strand, within GFF3838 at 35.960 kb on - strand, within GFF3838 at 36.046 kb on + strand, within GFF3838 at 36.046 kb on + strand, within GFF3838 at 36.047 kb on - strand, within GFF3838 at 36.047 kb on - strand, within GFF3838 at 36.047 kb on - strand, within GFF3838 at 36.266 kb on - strand, within GFF3838 at 36.344 kb on - strand, within GFF3838 at 36.478 kb on + strand, within GFF3838 at 36.478 kb on + strand, within GFF3838 at 36.478 kb on + strand, within GFF3838 at 36.479 kb on - strand, within GFF3838 at 36.479 kb on - strand, within GFF3838 at 36.496 kb on + strand, within GFF3838 at 36.496 kb on + strand, within GFF3838 at 36.496 kb on + strand, within GFF3838 at 36.496 kb on + strand, within GFF3838 at 36.497 kb on - strand, within GFF3838 at 36.497 kb on - strand, within GFF3838 at 36.497 kb on - strand, within GFF3838 at 36.497 kb on - strand, within GFF3838 at 36.665 kb on - strand, within GFF3838 at 36.665 kb on - strand, within GFF3838 at 36.665 kb on - strand, within GFF3838 at 36.700 kb on + strand, within GFF3838 at 36.700 kb on + strand, within GFF3838 at 36.700 kb on + strand, within GFF3838 at 36.701 kb on - strand, within GFF3838 at 36.701 kb on - strand, within GFF3838 at 36.703 kb on + strand, within GFF3838 at 36.703 kb on + strand, within GFF3838 at 36.703 kb on + strand, within GFF3838 at 36.870 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.973 kb on + strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 36.974 kb on - strand, within GFF3838 at 37.141 kb on + strand at 37.141 kb on + strand at 37.142 kb on - strand at 37.142 kb on - strand at 37.142 kb on - strand at 37.142 kb on - strand at 37.142 kb on - strand at 37.142 kb on - strand at 37.279 kb on + strand at 37.279 kb on + strand at 37.280 kb on - strand at 37.280 kb on - strand at 37.280 kb on - strand at 37.280 kb on - strand at 37.280 kb on - strand at 37.341 kb on - strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.496 kb on + strand at 37.497 kb on - strand at 37.497 kb on - strand at 37.497 kb on - strand at 37.497 kb on - strand at 37.497 kb on - strand at 37.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 33,612 + -1.8 33,612 + +0.7 33,613 - +0.2 33,676 + -0.2 33,736 + -0.2 33,736 + -0.8 33,736 + +0.0 33,737 + -0.6 33,737 - -0.0 33,737 - -1.1 33,737 - +1.0 33,737 - -1.0 33,754 + -1.1 33,755 - -1.1 33,755 - +1.1 33,755 - +0.0 33,755 - -0.4 33,809 - +0.8 33,811 + -1.8 33,811 + -0.4 33,811 + +0.2 33,811 + +1.7 33,811 + -1.6 33,812 - -0.5 33,812 - +0.8 33,812 - -0.6 33,812 - -0.8 33,901 + +0.3 33,902 - -0.3 33,902 - -0.1 33,902 - -0.6 33,902 - +0.1 33,902 - -0.6 33,932 - -1.3 34,378 + +0.7 34,416 + +0.3 34,476 + -0.5 34,477 - +2.1 34,477 - -0.1 34,486 + +1.1 34,487 - -1.4 34,515 + +0.1 34,516 - -0.7 34,516 - -2.8 34,516 - -0.4 34,699 + -2.3 34,699 + +0.7 34,699 + -3.2 34,700 - -1.1 34,700 - -1.8 34,862 - GFF3838 0.10 -1.7 34,904 - GFF3838 0.12 -1.1 34,945 + GFF3838 0.13 -1.5 34,945 + GFF3838 0.13 -3.0 34,945 + GFF3838 0.13 -0.9 34,945 + GFF3838 0.13 -3.7 34,946 - GFF3838 0.13 +0.3 34,946 - GFF3838 0.13 -2.4 34,946 - GFF3838 0.13 -2.9 35,188 + GFF3838 0.22 -4.0 35,188 + GFF3838 0.22 -2.0 35,189 - GFF3838 0.22 -0.7 35,251 - GFF3838 0.24 -0.7 35,371 + GFF3838 0.28 -3.0 35,371 + GFF3838 0.28 -1.3 35,455 + GFF3838 0.31 -3.0 35,456 - GFF3838 0.31 -0.9 35,456 - GFF3838 0.31 -3.7 35,456 - GFF3838 0.31 -1.3 35,578 + GFF3838 0.36 -0.3 35,579 - GFF3838 0.36 -2.2 35,630 - GFF3838 0.37 -0.3 35,695 + GFF3838 0.40 -2.2 35,696 - GFF3838 0.40 -0.9 35,696 - GFF3838 0.40 -0.6 35,872 + GFF3838 0.46 -1.9 35,873 - GFF3838 0.46 -2.0 35,873 - GFF3838 0.46 -1.1 35,873 - GFF3838 0.46 -1.6 35,959 + GFF3838 0.49 -2.9 35,959 + GFF3838 0.49 +0.7 35,960 - GFF3838 0.49 -1.9 36,046 + GFF3838 0.52 -2.7 36,046 + GFF3838 0.52 +0.7 36,047 - GFF3838 0.52 -2.4 36,047 - GFF3838 0.52 -0.2 36,047 - GFF3838 0.52 -1.9 36,266 - GFF3838 0.60 -4.2 36,344 - GFF3838 0.63 -2.3 36,478 + GFF3838 0.67 -3.9 36,478 + GFF3838 0.67 -2.1 36,478 + GFF3838 0.67 -1.5 36,479 - GFF3838 0.67 -1.3 36,479 - GFF3838 0.67 -2.8 36,496 + GFF3838 0.68 -2.4 36,496 + GFF3838 0.68 -1.1 36,496 + GFF3838 0.68 +0.7 36,496 + GFF3838 0.68 -2.0 36,497 - GFF3838 0.68 -2.1 36,497 - GFF3838 0.68 -4.0 36,497 - GFF3838 0.68 -1.3 36,497 - GFF3838 0.68 -2.4 36,665 - GFF3838 0.74 -2.5 36,665 - GFF3838 0.74 -0.9 36,665 - GFF3838 0.74 -0.6 36,700 + GFF3838 0.75 -1.9 36,700 + GFF3838 0.75 -2.1 36,700 + GFF3838 0.75 -0.9 36,701 - GFF3838 0.75 -0.9 36,701 - GFF3838 0.75 -1.4 36,703 + GFF3838 0.75 -1.1 36,703 + GFF3838 0.75 -2.4 36,703 + GFF3838 0.75 -3.2 36,870 + GFF3838 0.81 -2.1 36,973 + GFF3838 0.85 +0.7 36,973 + GFF3838 0.85 -0.1 36,973 + GFF3838 0.85 -1.9 36,973 + GFF3838 0.85 +0.8 36,973 + GFF3838 0.85 -2.3 36,973 + GFF3838 0.85 -2.3 36,973 + GFF3838 0.85 -2.0 36,973 + GFF3838 0.85 -3.1 36,973 + GFF3838 0.85 +0.7 36,973 + GFF3838 0.85 -2.1 36,973 + GFF3838 0.85 -0.9 36,973 + GFF3838 0.85 -2.6 36,973 + GFF3838 0.85 -2.2 36,973 + GFF3838 0.85 -3.4 36,974 - GFF3838 0.85 -2.9 36,974 - GFF3838 0.85 -1.3 36,974 - GFF3838 0.85 -2.1 36,974 - GFF3838 0.85 -0.6 36,974 - GFF3838 0.85 -0.7 36,974 - GFF3838 0.85 -3.5 36,974 - GFF3838 0.85 -3.2 36,974 - GFF3838 0.85 -1.3 36,974 - GFF3838 0.85 -3.4 36,974 - GFF3838 0.85 +0.1 36,974 - GFF3838 0.85 -3.3 36,974 - GFF3838 0.85 -3.6 36,974 - GFF3838 0.85 -2.3 36,974 - GFF3838 0.85 -0.9 36,974 - GFF3838 0.85 -1.9 36,974 - GFF3838 0.85 -2.4 36,974 - GFF3838 0.85 -3.1 36,974 - GFF3838 0.85 -1.9 36,974 - GFF3838 0.85 -3.7 37,141 + -4.4 37,141 + -1.7 37,142 - -2.6 37,142 - -2.9 37,142 - -3.6 37,142 - -2.7 37,142 - -1.7 37,142 - -3.5 37,279 + +0.7 37,279 + -1.5 37,280 - -2.2 37,280 - -2.7 37,280 - +1.7 37,280 - -0.8 37,280 - -1.7 37,341 - -0.9 37,496 + -0.7 37,496 + -1.5 37,496 + -0.8 37,496 + +0.2 37,496 + -0.8 37,496 + -0.1 37,496 + -1.2 37,496 + -1.7 37,496 + -0.8 37,497 - -0.4 37,497 - +0.6 37,497 - +0.1 37,497 - +0.7 37,497 - +0.1 37,498 - +0.8
Or see this region's nucleotide sequence