Strain Fitness in Variovorax sp. SCN45 around GFF380

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF378 and GFF379 are separated by 7 nucleotidesGFF379 and GFF380 overlap by 11 nucleotidesGFF380 and GFF381 are separated by 10 nucleotidesGFF381 and GFF382 are separated by 30 nucleotides GFF378 - RNA (nucleoside 2'-O)-methyltransferase, at 410,318 to 411,103 GFF378 GFF379 - Ribonuclease HII (EC 3.1.26.4), at 411,111 to 411,821 GFF379 GFF380 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 411,811 to 412,959 GFF380 GFF381 - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase (EC 2.3.1.129), at 412,970 to 413,758 GFF381 GFF382 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59), at 413,789 to 414,256 GFF382 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1at 411.175 kb on - strandat 411.316 kb on + strand, within GFF379at 411.316 kb on + strand, within GFF379at 411.316 kb on + strand, within GFF379at 411.317 kb on - strand, within GFF379at 411.317 kb on - strand, within GFF379at 411.546 kb on + strand, within GFF379

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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411,175 - +0.5
411,316 + GFF379 0.29 -0.2
411,316 + GFF379 0.29 -0.7
411,316 + GFF379 0.29 +0.7
411,317 - GFF379 0.29 -2.2
411,317 - GFF379 0.29 +0.8
411,546 + GFF379 0.61 +0.1

Or see this region's nucleotide sequence