Strain Fitness in Variovorax sp. SCN45 around GFF365

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF364 and GFF365 are separated by 31 nucleotidesGFF365 and GFF366 are separated by 80 nucleotidesGFF366 and GFF367 overlap by 4 nucleotides GFF364 - acyl-CoA dehydrogenase, putative phosphotransferase, at 394,571 to 395,680 GFF364 GFF365 - Acyl-CoA dehydrogenase, at 395,712 to 396,983 GFF365 GFF366 - Histone acetyltransferase HPA2 and related acetyltransferases, at 397,064 to 397,558 GFF366 GFF367 - Phosphoglucosamine mutase (EC 5.4.2.10), at 397,555 to 398,892 GFF367 Position (kb) 395 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1at 394.733 kb on + strand, within GFF364at 394.733 kb on + strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.734 kb on - strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.760 kb on + strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.761 kb on - strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.880 kb on + strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.881 kb on - strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.922 kb on + strand, within GFF364at 394.923 kb on - strand, within GFF364at 394.923 kb on - strand, within GFF364at 394.923 kb on - strand, within GFF364at 394.923 kb on - strand, within GFF364at 394.932 kb on - strand, within GFF364at 395.004 kb on - strand, within GFF364at 395.004 kb on - strand, within GFF364at 395.090 kb on + strand, within GFF364at 395.091 kb on - strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.126 kb on + strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.127 kb on - strand, within GFF364at 395.363 kb on + strand, within GFF364at 395.363 kb on + strand, within GFF364at 395.363 kb on + strand, within GFF364at 395.364 kb on - strand, within GFF364at 395.364 kb on - strand, within GFF364at 395.364 kb on - strand, within GFF364at 395.364 kb on - strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.456 kb on + strand, within GFF364at 395.457 kb on - strand, within GFF364at 395.457 kb on - strand, within GFF364at 395.457 kb on - strand, within GFF364at 395.469 kb on - strand, within GFF364at 395.525 kb on + strand, within GFF364at 395.526 kb on - strand, within GFF364at 395.526 kb on - strand, within GFF364at 395.526 kb on - strand, within GFF364at 395.526 kb on - strand, within GFF364at 395.526 kb on - strand, within GFF364at 395.534 kb on + strand, within GFF364at 395.534 kb on + strand, within GFF364at 395.534 kb on + strand, within GFF364at 395.535 kb on - strand, within GFF364at 395.535 kb on - strand, within GFF364at 395.535 kb on - strand, within GFF364at 395.535 kb on - strand, within GFF364at 395.535 kb on - strand, within GFF364at 395.725 kb on - strandat 395.725 kb on - strandat 395.725 kb on - strandat 395.784 kb on + strandat 395.785 kb on - strandat 395.785 kb on - strandat 395.785 kb on - strandat 395.785 kb on - strandat 395.785 kb on - strandat 395.785 kb on - strandat 395.802 kb on + strandat 395.802 kb on + strandat 395.802 kb on + strandat 395.803 kb on - strandat 395.803 kb on - strandat 395.803 kb on - strandat 395.943 kb on + strand, within GFF365at 395.973 kb on + strand, within GFF365at 395.974 kb on - strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.216 kb on + strand, within GFF365at 396.217 kb on - strand, within GFF365at 396.217 kb on - strand, within GFF365at 396.217 kb on - strand, within GFF365at 396.217 kb on - strand, within GFF365at 396.217 kb on - strand, within GFF365at 396.393 kb on + strand, within GFF365at 396.394 kb on - strand, within GFF365at 396.394 kb on - strand, within GFF365at 396.426 kb on + strand, within GFF365at 396.426 kb on + strand, within GFF365at 396.426 kb on + strand, within GFF365at 396.426 kb on + strand, within GFF365at 396.426 kb on + strand, within GFF365at 396.427 kb on - strand, within GFF365at 396.427 kb on - strand, within GFF365at 396.427 kb on - strand, within GFF365at 396.427 kb on - strand, within GFF365at 396.427 kb on - strand, within GFF365at 396.846 kb on + strand, within GFF365at 396.846 kb on + strand, within GFF365at 396.846 kb on + strand, within GFF365at 396.847 kb on - strand, within GFF365at 396.847 kb on - strand, within GFF365at 396.936 kb on + strandat 396.936 kb on + strandat 396.936 kb on + strandat 396.936 kb on + strandat 396.936 kb on + strandat 396.937 kb on - strandat 396.937 kb on - strandat 396.937 kb on - strandat 396.937 kb on - strandat 396.937 kb on - strandat 397.117 kb on - strand, within GFF366at 397.117 kb on - strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.140 kb on + strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.141 kb on - strand, within GFF366at 397.144 kb on + strand, within GFF366at 397.144 kb on + strand, within GFF366at 397.144 kb on + strand, within GFF366at 397.144 kb on + strand, within GFF366at 397.144 kb on + strand, within GFF366at 397.145 kb on - strand, within GFF366at 397.470 kb on + strand, within GFF366at 397.470 kb on + strand, within GFF366at 397.470 kb on + strand, within GFF366at 397.470 kb on + strand, within GFF366at 397.470 kb on + strand, within GFF366at 397.471 kb on - strand, within GFF366at 397.519 kb on - strandat 397.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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394,733 + GFF364 0.15 +0.5
394,733 + GFF364 0.15 +0.4
394,734 - GFF364 0.15 -0.8
394,734 - GFF364 0.15 +0.1
394,734 - GFF364 0.15 -1.4
394,734 - GFF364 0.15 -0.8
394,760 + GFF364 0.17 -1.9
394,760 + GFF364 0.17 -1.2
394,760 + GFF364 0.17 -1.6
394,760 + GFF364 0.17 +1.6
394,760 + GFF364 0.17 -0.5
394,760 + GFF364 0.17 -0.3
394,760 + GFF364 0.17 -0.3
394,760 + GFF364 0.17 -0.7
394,761 - GFF364 0.17 -1.4
394,761 - GFF364 0.17 +1.4
394,761 - GFF364 0.17 -0.3
394,761 - GFF364 0.17 -0.7
394,880 + GFF364 0.28 -3.1
394,880 + GFF364 0.28 -1.7
394,880 + GFF364 0.28 -1.3
394,880 + GFF364 0.28 -0.6
394,880 + GFF364 0.28 -2.4
394,880 + GFF364 0.28 +0.7
394,880 + GFF364 0.28 -0.8
394,880 + GFF364 0.28 -0.5
394,880 + GFF364 0.28 +0.6
394,881 - GFF364 0.28 -1.6
394,881 - GFF364 0.28 -0.6
394,881 - GFF364 0.28 -1.3
394,881 - GFF364 0.28 -1.2
394,881 - GFF364 0.28 -0.7
394,881 - GFF364 0.28 -0.0
394,881 - GFF364 0.28 -1.7
394,922 + GFF364 0.32 +0.3
394,922 + GFF364 0.32 -0.6
394,922 + GFF364 0.32 -1.1
394,922 + GFF364 0.32 -2.0
394,922 + GFF364 0.32 -0.6
394,922 + GFF364 0.32 -0.2
394,922 + GFF364 0.32 +1.4
394,923 - GFF364 0.32 +0.1
394,923 - GFF364 0.32 -0.8
394,923 - GFF364 0.32 -2.4
394,923 - GFF364 0.32 -1.8
394,932 - GFF364 0.33 -1.2
395,004 - GFF364 0.39 -2.6
395,004 - GFF364 0.39 +1.2
395,090 + GFF364 0.47 -0.2
395,091 - GFF364 0.47 -0.0
395,126 + GFF364 0.50 -1.2
395,126 + GFF364 0.50 +1.1
395,126 + GFF364 0.50 +0.8
395,126 + GFF364 0.50 -1.6
395,126 + GFF364 0.50 +0.1
395,126 + GFF364 0.50 -1.9
395,126 + GFF364 0.50 -1.0
395,127 - GFF364 0.50 +0.4
395,127 - GFF364 0.50 -1.0
395,127 - GFF364 0.50 -0.8
395,127 - GFF364 0.50 -0.9
395,127 - GFF364 0.50 -1.0
395,127 - GFF364 0.50 -0.2
395,127 - GFF364 0.50 +1.2
395,127 - GFF364 0.50 -0.7
395,127 - GFF364 0.50 -3.1
395,127 - GFF364 0.50 +0.0
395,127 - GFF364 0.50 -0.8
395,127 - GFF364 0.50 -1.0
395,363 + GFF364 0.71 -0.2
395,363 + GFF364 0.71 -0.6
395,363 + GFF364 0.71 +0.4
395,364 - GFF364 0.71 -0.7
395,364 - GFF364 0.71 -2.2
395,364 - GFF364 0.71 +1.4
395,364 - GFF364 0.71 -0.9
395,456 + GFF364 0.80 +1.4
395,456 + GFF364 0.80 -0.7
395,456 + GFF364 0.80 -0.3
395,456 + GFF364 0.80 -0.9
395,456 + GFF364 0.80 -0.3
395,456 + GFF364 0.80 -0.3
395,456 + GFF364 0.80 -0.6
395,457 - GFF364 0.80 -1.5
395,457 - GFF364 0.80 +0.1
395,457 - GFF364 0.80 -0.9
395,469 - GFF364 0.81 -0.9
395,525 + GFF364 0.86 -0.4
395,526 - GFF364 0.86 +1.4
395,526 - GFF364 0.86 -0.6
395,526 - GFF364 0.86 -2.8
395,526 - GFF364 0.86 -0.1
395,526 - GFF364 0.86 -1.5
395,534 + GFF364 0.87 -3.1
395,534 + GFF364 0.87 -1.5
395,534 + GFF364 0.87 +0.4
395,535 - GFF364 0.87 +0.2
395,535 - GFF364 0.87 -0.9
395,535 - GFF364 0.87 -0.4
395,535 - GFF364 0.87 -0.9
395,535 - GFF364 0.87 -1.3
395,725 - -1.2
395,725 - -0.1
395,725 - -1.1
395,784 + -1.7
395,785 - -2.2
395,785 - -0.9
395,785 - -0.3
395,785 - -0.5
395,785 - -0.9
395,785 - +0.7
395,802 + -2.9
395,802 + -1.1
395,802 + -0.6
395,803 - -0.3
395,803 - -1.6
395,803 - -0.8
395,943 + GFF365 0.18 +0.8
395,973 + GFF365 0.21 +0.3
395,974 - GFF365 0.21 -0.7
396,216 + GFF365 0.40 -1.3
396,216 + GFF365 0.40 -0.5
396,216 + GFF365 0.40 -0.8
396,216 + GFF365 0.40 +1.0
396,216 + GFF365 0.40 +0.1
396,216 + GFF365 0.40 +0.5
396,216 + GFF365 0.40 -0.3
396,216 + GFF365 0.40 -1.8
396,217 - GFF365 0.40 -0.6
396,217 - GFF365 0.40 +0.2
396,217 - GFF365 0.40 -0.5
396,217 - GFF365 0.40 -2.8
396,217 - GFF365 0.40 -1.1
396,393 + GFF365 0.54 -1.3
396,394 - GFF365 0.54 +0.0
396,394 - GFF365 0.54 -0.6
396,426 + GFF365 0.56 -1.1
396,426 + GFF365 0.56 -1.4
396,426 + GFF365 0.56 +0.1
396,426 + GFF365 0.56 -0.7
396,426 + GFF365 0.56 -0.6
396,427 - GFF365 0.56 -1.7
396,427 - GFF365 0.56 -0.2
396,427 - GFF365 0.56 +0.0
396,427 - GFF365 0.56 -0.3
396,427 - GFF365 0.56 +0.2
396,846 + GFF365 0.89 -1.2
396,846 + GFF365 0.89 -1.8
396,846 + GFF365 0.89 -1.1
396,847 - GFF365 0.89 -0.4
396,847 - GFF365 0.89 -0.9
396,936 + -1.2
396,936 + -0.2
396,936 + -2.3
396,936 + -0.7
396,936 + -0.1
396,937 - -1.2
396,937 - +0.6
396,937 - -0.4
396,937 - -0.4
396,937 - -1.2
397,117 - GFF366 0.11 -0.9
397,117 - GFF366 0.11 -0.8
397,140 + GFF366 0.15 -0.5
397,140 + GFF366 0.15 -1.4
397,140 + GFF366 0.15 +0.5
397,140 + GFF366 0.15 -1.8
397,140 + GFF366 0.15 -1.0
397,140 + GFF366 0.15 +1.0
397,140 + GFF366 0.15 -0.2
397,141 - GFF366 0.16 -0.7
397,141 - GFF366 0.16 -0.3
397,141 - GFF366 0.16 +0.2
397,141 - GFF366 0.16 -0.5
397,141 - GFF366 0.16 +0.0
397,141 - GFF366 0.16 -0.0
397,144 + GFF366 0.16 -1.0
397,144 + GFF366 0.16 +0.3
397,144 + GFF366 0.16 -0.6
397,144 + GFF366 0.16 -0.8
397,144 + GFF366 0.16 +0.6
397,145 - GFF366 0.16 -1.2
397,470 + GFF366 0.82 -0.2
397,470 + GFF366 0.82 -0.9
397,470 + GFF366 0.82 -1.2
397,470 + GFF366 0.82 -0.7
397,470 + GFF366 0.82 -0.2
397,471 - GFF366 0.82 -0.3
397,519 - +0.6
397,519 - +0.4

Or see this region's nucleotide sequence