Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3479 and GFF3480 are separated by 105 nucleotides GFF3480 and GFF3481 overlap by 8 nucleotides GFF3481 and GFF3482 overlap by 4 nucleotides
GFF3479 - no description, at 301,863 to 303,020
GFF3479
GFF3480 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,126 to 303,830
GFF3480
GFF3481 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 303,823 to 304,593
GFF3481
GFF3482 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 304,590 to 305,552
GFF3482
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 302.340 kb on + strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.341 kb on - strand, within GFF3479 at 302.643 kb on + strand, within GFF3479 at 302.644 kb on - strand, within GFF3479 at 302.742 kb on + strand, within GFF3479 at 302.742 kb on + strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.743 kb on - strand, within GFF3479 at 302.760 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.820 kb on + strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.821 kb on - strand, within GFF3479 at 302.943 kb on + strand at 302.943 kb on + strand at 302.943 kb on + strand at 302.943 kb on + strand at 302.944 kb on - strand at 302.944 kb on - strand at 302.944 kb on - strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.018 kb on + strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.019 kb on - strand at 303.028 kb on - strand at 303.028 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.157 kb on - strand at 303.448 kb on + strand, within GFF3480 at 303.448 kb on + strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.449 kb on - strand, within GFF3480 at 303.487 kb on + strand, within GFF3480 at 303.488 kb on - strand, within GFF3480 at 303.851 kb on + strand at 303.851 kb on + strand at 303.851 kb on + strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 303.852 kb on - strand at 304.177 kb on + strand, within GFF3481 at 304.177 kb on + strand, within GFF3481 at 304.177 kb on + strand, within GFF3481 at 304.178 kb on - strand, within GFF3481 at 304.178 kb on - strand, within GFF3481 at 304.692 kb on - strand, within GFF3482 at 304.697 kb on - strand, within GFF3482 at 304.697 kb on - strand, within GFF3482 at 304.738 kb on + strand, within GFF3482 at 304.738 kb on + strand, within GFF3482 at 304.739 kb on - strand, within GFF3482 at 304.739 kb on - strand, within GFF3482 at 304.739 kb on - strand, within GFF3482 at 304.739 kb on - strand, within GFF3482 at 304.739 kb on - strand, within GFF3482 at 304.739 kb on - strand, within GFF3482
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 302,340 + GFF3479 0.41 +1.0 302,341 - GFF3479 0.41 -1.9 302,341 - GFF3479 0.41 +0.0 302,341 - GFF3479 0.41 -0.9 302,643 + GFF3479 0.67 +0.3 302,644 - GFF3479 0.67 -0.3 302,742 + GFF3479 0.76 -1.6 302,742 + GFF3479 0.76 -0.3 302,743 - GFF3479 0.76 +0.2 302,743 - GFF3479 0.76 -0.4 302,743 - GFF3479 0.76 +1.3 302,743 - GFF3479 0.76 -1.2 302,743 - GFF3479 0.76 -0.8 302,760 + GFF3479 0.77 -0.1 302,820 + GFF3479 0.83 -0.9 302,820 + GFF3479 0.83 -0.5 302,820 + GFF3479 0.83 -0.4 302,820 + GFF3479 0.83 +0.5 302,821 - GFF3479 0.83 -0.1 302,821 - GFF3479 0.83 -1.2 302,821 - GFF3479 0.83 -0.3 302,821 - GFF3479 0.83 -0.3 302,821 - GFF3479 0.83 +0.3 302,821 - GFF3479 0.83 -1.7 302,943 + -0.4 302,943 + +0.6 302,943 + +0.5 302,943 + -0.8 302,944 - +0.8 302,944 - +0.5 302,944 - +0.3 303,018 + +0.1 303,018 + -0.1 303,018 + -1.5 303,018 + +0.9 303,018 + -0.2 303,018 + -0.2 303,019 - -0.3 303,019 - -0.5 303,019 - -0.4 303,019 - -0.8 303,019 - -0.7 303,028 - -0.5 303,028 - -0.4 303,157 - -0.4 303,157 - -0.7 303,157 - +1.1 303,157 - +0.3 303,448 + GFF3480 0.46 -0.5 303,448 + GFF3480 0.46 -2.1 303,449 - GFF3480 0.46 +0.3 303,449 - GFF3480 0.46 -1.4 303,449 - GFF3480 0.46 -0.7 303,487 + GFF3480 0.51 -2.3 303,488 - GFF3480 0.51 -0.9 303,851 + +0.5 303,851 + +0.4 303,851 + -1.0 303,852 - +0.9 303,852 - -0.6 303,852 - -0.3 303,852 - -1.1 303,852 - -0.0 303,852 - -0.7 304,177 + GFF3481 0.46 -1.6 304,177 + GFF3481 0.46 +0.9 304,177 + GFF3481 0.46 +0.1 304,178 - GFF3481 0.46 -0.4 304,178 - GFF3481 0.46 +0.2 304,692 - GFF3482 0.11 +0.6 304,697 - GFF3482 0.11 -0.9 304,697 - GFF3482 0.11 +0.5 304,738 + GFF3482 0.15 +0.9 304,738 + GFF3482 0.15 +0.1 304,739 - GFF3482 0.15 -0.7 304,739 - GFF3482 0.15 +0.3 304,739 - GFF3482 0.15 -0.1 304,739 - GFF3482 0.15 -1.9 304,739 - GFF3482 0.15 -0.9 304,739 - GFF3482 0.15 -0.6
Or see this region's nucleotide sequence