Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3471 and GFF3472 overlap by 4 nucleotides GFF3472 and GFF3473 are separated by 110 nucleotides GFF3473 and GFF3474 are separated by 73 nucleotides
GFF3471 - hypothetical protein, at 291,821 to 292,321
GFF3471
GFF3472 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 292,318 to 292,761
GFF3472
GFF3473 - no description, at 292,872 to 293,801
GFF3473
GFF3474 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 293,875 to 295,866
GFF3474
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.963 kb on + strand, within GFF3471 at 291.963 kb on + strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 292.062 kb on + strand, within GFF3471 at 292.159 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.337 kb on + strand at 292.595 kb on + strand, within GFF3472 at 292.596 kb on - strand, within GFF3472 at 292.822 kb on - strand at 292.952 kb on + strand at 292.953 kb on - strand at 292.978 kb on + strand, within GFF3473 at 292.978 kb on + strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 293.647 kb on + strand, within GFF3473 at 293.830 kb on + strand at 293.831 kb on - strand at 294.235 kb on + strand, within GFF3474 at 294.235 kb on + strand, within GFF3474 at 294.236 kb on - strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.349 kb on + strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.350 kb on - strand, within GFF3474 at 294.352 kb on + strand, within GFF3474 at 294.353 kb on - strand, within GFF3474 at 294.353 kb on - strand, within GFF3474 at 294.391 kb on + strand, within GFF3474 at 294.391 kb on + strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.392 kb on - strand, within GFF3474 at 294.553 kb on + strand, within GFF3474 at 294.754 kb on + strand, within GFF3474 at 294.754 kb on + strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474 at 294.755 kb on - strand, within GFF3474
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 291,963 + GFF3471 0.28 -0.1 291,963 + GFF3471 0.28 -0.7 291,964 - GFF3471 0.29 -1.1 291,964 - GFF3471 0.29 +0.4 291,964 - GFF3471 0.29 +1.3 292,062 + GFF3471 0.48 +0.6 292,159 + GFF3471 0.67 -1.7 292,161 + GFF3471 0.68 +1.2 292,161 + GFF3471 0.68 -0.1 292,161 + GFF3471 0.68 -3.1 292,161 + GFF3471 0.68 -1.3 292,161 + GFF3471 0.68 -0.4 292,162 - GFF3471 0.68 +1.5 292,162 - GFF3471 0.68 -0.1 292,162 - GFF3471 0.68 -1.7 292,162 - GFF3471 0.68 +0.3 292,162 - GFF3471 0.68 -0.1 292,162 - GFF3471 0.68 -0.7 292,337 + +1.1 292,595 + GFF3472 0.62 -0.9 292,596 - GFF3472 0.63 +2.3 292,822 - -0.8 292,952 + -0.1 292,953 - +1.1 292,978 + GFF3473 0.11 -0.1 292,978 + GFF3473 0.11 +0.1 292,979 - GFF3473 0.12 +0.1 292,979 - GFF3473 0.12 +0.6 293,647 + GFF3473 0.83 -0.1 293,830 + +1.1 293,831 - -0.3 294,235 + GFF3474 0.18 -0.1 294,235 + GFF3474 0.18 -0.1 294,236 - GFF3474 0.18 -0.3 294,349 + GFF3474 0.24 -0.4 294,349 + GFF3474 0.24 -0.7 294,349 + GFF3474 0.24 +0.1 294,350 - GFF3474 0.24 +0.2 294,350 - GFF3474 0.24 -0.4 294,350 - GFF3474 0.24 +0.5 294,350 - GFF3474 0.24 +0.4 294,350 - GFF3474 0.24 -0.1 294,352 + GFF3474 0.24 -2.3 294,353 - GFF3474 0.24 -0.1 294,353 - GFF3474 0.24 -2.1 294,391 + GFF3474 0.26 +0.5 294,391 + GFF3474 0.26 -0.9 294,392 - GFF3474 0.26 -0.1 294,392 - GFF3474 0.26 -0.0 294,392 - GFF3474 0.26 -1.1 294,553 + GFF3474 0.34 +0.3 294,754 + GFF3474 0.44 +0.9 294,754 + GFF3474 0.44 +0.3 294,755 - GFF3474 0.44 +0.6 294,755 - GFF3474 0.44 -0.3 294,755 - GFF3474 0.44 +0.3 294,755 - GFF3474 0.44 +0.9 294,755 - GFF3474 0.44 -0.5
Or see this region's nucleotide sequence