Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3148 and GFF3149 overlap by 4 nucleotides GFF3149 and GFF3150 are separated by 101 nucleotides GFF3150 and GFF3151 are separated by 82 nucleotides
GFF3148 - no description, at 581,990 to 583,102
GFF3148
GFF3149 - RND efflux system, inner membrane transporter, at 583,099 to 586,152
GFF3149
GFF3150 - Transcriptional regulator, AsnC family, at 586,254 to 586,784
GFF3150
GFF3151 - no description, at 586,867 to 587,691
GFF3151
Position (kb) 583
584
585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.335 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.939 kb on - strand, within GFF3148 at 583.058 kb on + strand at 583.516 kb on + strand, within GFF3149 at 583.516 kb on + strand, within GFF3149 at 583.570 kb on + strand, within GFF3149 at 583.598 kb on + strand, within GFF3149 at 583.599 kb on - strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 584.881 kb on + strand, within GFF3149 at 584.882 kb on - strand, within GFF3149 at 584.882 kb on - strand, within GFF3149 at 585.331 kb on + strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.332 kb on - strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.619 kb on + strand, within GFF3149 at 585.620 kb on - strand, within GFF3149 at 585.620 kb on - strand, within GFF3149 at 585.622 kb on + strand, within GFF3149 at 585.622 kb on + strand, within GFF3149 at 585.623 kb on - strand, within GFF3149 at 585.640 kb on + strand, within GFF3149 at 585.728 kb on - strand, within GFF3149 at 585.887 kb on - strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.126 kb on + strand at 586.127 kb on - strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.205 kb on + strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.206 kb on - strand at 586.210 kb on + strand at 586.211 kb on - strand at 586.211 kb on - strand at 586.422 kb on + strand, within GFF3150 at 586.422 kb on + strand, within GFF3150 at 586.584 kb on + strand, within GFF3150 at 586.584 kb on + strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.585 kb on - strand, within GFF3150 at 586.621 kb on - strand, within GFF3150 at 586.782 kb on + strand at 586.783 kb on - strand at 586.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 582,335 + GFF3148 0.31 -0.9 582,932 + GFF3148 0.85 +3.0 582,932 + GFF3148 0.85 -0.0 582,933 - GFF3148 0.85 +0.4 582,933 - GFF3148 0.85 -0.0 582,933 - GFF3148 0.85 -0.6 582,933 - GFF3148 0.85 +0.7 582,938 + GFF3148 0.85 +1.5 582,938 + GFF3148 0.85 +0.4 582,938 + GFF3148 0.85 +0.4 582,939 - GFF3148 0.85 +1.1 583,058 + -1.4 583,516 + GFF3149 0.14 +1.2 583,516 + GFF3149 0.14 +0.6 583,570 + GFF3149 0.15 -0.6 583,598 + GFF3149 0.16 -0.6 583,599 - GFF3149 0.16 -1.8 583,762 + GFF3149 0.22 -0.0 583,762 + GFF3149 0.22 -0.7 583,762 + GFF3149 0.22 -1.6 583,762 + GFF3149 0.22 +1.0 583,762 + GFF3149 0.22 -0.8 583,763 - GFF3149 0.22 -1.0 583,763 - GFF3149 0.22 +0.1 583,763 - GFF3149 0.22 -0.8 583,771 + GFF3149 0.22 -0.5 583,771 + GFF3149 0.22 +0.4 584,881 + GFF3149 0.58 -0.5 584,882 - GFF3149 0.58 -0.4 584,882 - GFF3149 0.58 -1.6 585,331 + GFF3149 0.73 -0.8 585,332 - GFF3149 0.73 +1.0 585,332 - GFF3149 0.73 -0.7 585,332 - GFF3149 0.73 -0.4 585,619 + GFF3149 0.83 -0.9 585,619 + GFF3149 0.83 -0.9 585,619 + GFF3149 0.83 -1.3 585,619 + GFF3149 0.83 +0.4 585,620 - GFF3149 0.83 -0.7 585,620 - GFF3149 0.83 -0.3 585,622 + GFF3149 0.83 -0.2 585,622 + GFF3149 0.83 -0.2 585,623 - GFF3149 0.83 -0.8 585,640 + GFF3149 0.83 -0.2 585,728 - GFF3149 0.86 -0.8 585,887 - +0.3 586,126 + -0.7 586,126 + -0.5 586,126 + -1.3 586,126 + -0.8 586,127 - -1.0 586,205 + -0.9 586,205 + -2.0 586,205 + -3.4 586,205 + -2.2 586,205 + -0.1 586,205 + -0.9 586,205 + -1.2 586,205 + +0.3 586,205 + -0.8 586,205 + +0.4 586,205 + -1.0 586,206 - -0.1 586,206 - +0.4 586,206 - +0.8 586,206 - -0.6 586,206 - -0.7 586,206 - +1.7 586,206 - -0.2 586,206 - -0.2 586,210 + -0.3 586,211 - -1.1 586,211 - +0.1 586,422 + GFF3150 0.32 -1.2 586,422 + GFF3150 0.32 -2.0 586,584 + GFF3150 0.62 -0.5 586,584 + GFF3150 0.62 +0.1 586,585 - GFF3150 0.62 -0.1 586,585 - GFF3150 0.62 -0.9 586,585 - GFF3150 0.62 -2.1 586,585 - GFF3150 0.62 +0.8 586,621 - GFF3150 0.69 -1.6 586,782 + +1.4 586,783 - -0.0 586,783 - -0.6
Or see this region's nucleotide sequence