Strain Fitness in Variovorax sp. SCN45 around GFF285

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF283 and GFF284 are separated by 31 nucleotidesGFF284 and GFF285 are separated by 45 nucleotidesGFF285 and GFF286 are separated by 111 nucleotides GFF283 - no description, at 318,130 to 319,224 GFF283 GFF284 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 319,256 to 320,149 GFF284 GFF285 - no description, at 320,195 to 321,037 GFF285 GFF286 - Transcriptional regulator, LysR family, at 321,149 to 322,042 GFF286 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2 3at 319.257 kb on + strandat 319.257 kb on + strandat 319.257 kb on + strandat 319.258 kb on - strandat 319.391 kb on - strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.470 kb on + strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.471 kb on - strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.590 kb on + strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.591 kb on - strand, within GFF284at 319.669 kb on + strand, within GFF284at 319.671 kb on + strand, within GFF284at 319.671 kb on + strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.672 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.704 kb on - strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.725 kb on + strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.726 kb on - strand, within GFF284at 319.826 kb on - strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.911 kb on + strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.912 kb on - strand, within GFF284at 319.936 kb on - strand, within GFF284at 319.936 kb on - strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.001 kb on + strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.002 kb on - strand, within GFF284at 320.210 kb on - strandat 320.340 kb on + strand, within GFF285at 320.340 kb on + strand, within GFF285at 320.341 kb on - strand, within GFF285at 320.772 kb on + strand, within GFF285at 320.773 kb on - strand, within GFF285at 320.773 kb on - strand, within GFF285at 320.773 kb on - strand, within GFF285at 320.773 kb on - strand, within GFF285at 321.052 kb on + strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.053 kb on - strandat 321.085 kb on + strandat 321.085 kb on + strandat 321.085 kb on + strandat 321.085 kb on + strandat 321.085 kb on + strandat 321.085 kb on + strandat 321.086 kb on - strandat 321.086 kb on - strandat 321.086 kb on - strandat 321.170 kb on + strandat 321.170 kb on + strandat 321.171 kb on - strandat 321.171 kb on - strandat 321.171 kb on - strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.224 kb on + strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.225 kb on - strandat 321.282 kb on + strand, within GFF286at 321.282 kb on + strand, within GFF286at 321.282 kb on + strand, within GFF286at 321.282 kb on + strand, within GFF286at 321.283 kb on - strand, within GFF286at 321.283 kb on - strand, within GFF286at 321.314 kb on + strand, within GFF286at 321.314 kb on + strand, within GFF286at 321.314 kb on + strand, within GFF286at 321.314 kb on + strand, within GFF286at 321.488 kb on + strand, within GFF286at 321.489 kb on - strand, within GFF286at 321.489 kb on - strand, within GFF286at 321.489 kb on - strand, within GFF286at 321.490 kb on - strand, within GFF286at 321.638 kb on + strand, within GFF286at 321.638 kb on + strand, within GFF286at 321.638 kb on + strand, within GFF286at 321.639 kb on - strand, within GFF286at 321.764 kb on + strand, within GFF286at 321.765 kb on - strand, within GFF286at 321.923 kb on + strand, within GFF286at 321.923 kb on + strand, within GFF286at 321.923 kb on + strand, within GFF286at 321.924 kb on - strand, within GFF286at 321.924 kb on - strand, within GFF286at 321.924 kb on - strand, within GFF286at 321.962 kb on + strandat 321.962 kb on + strandat 321.962 kb on + strandat 321.963 kb on - strandat 321.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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319,257 + -1.2
319,257 + -1.0
319,257 + +1.1
319,258 - +0.5
319,391 - GFF284 0.15 -0.5
319,470 + GFF284 0.24 +1.0
319,470 + GFF284 0.24 +0.8
319,470 + GFF284 0.24 +0.0
319,471 - GFF284 0.24 +0.2
319,471 - GFF284 0.24 +1.8
319,471 - GFF284 0.24 +0.3
319,590 + GFF284 0.37 +0.6
319,590 + GFF284 0.37 -0.6
319,590 + GFF284 0.37 +0.6
319,590 + GFF284 0.37 -1.1
319,590 + GFF284 0.37 +0.1
319,590 + GFF284 0.37 -0.6
319,590 + GFF284 0.37 +1.6
319,590 + GFF284 0.37 +1.9
319,591 - GFF284 0.37 -0.3
319,591 - GFF284 0.37 -2.3
319,591 - GFF284 0.37 -0.5
319,591 - GFF284 0.37 -1.0
319,591 - GFF284 0.37 -0.8
319,669 + GFF284 0.46 +1.4
319,671 + GFF284 0.46 +1.4
319,671 + GFF284 0.46 +0.0
319,672 - GFF284 0.47 -1.2
319,672 - GFF284 0.47 -1.0
319,672 - GFF284 0.47 -1.5
319,704 - GFF284 0.50 -0.8
319,704 - GFF284 0.50 +0.1
319,704 - GFF284 0.50 -1.3
319,725 + GFF284 0.52 +0.2
319,725 + GFF284 0.52 -0.5
319,725 + GFF284 0.52 +0.2
319,725 + GFF284 0.52 -1.5
319,725 + GFF284 0.52 -0.0
319,725 + GFF284 0.52 -1.0
319,725 + GFF284 0.52 -0.5
319,725 + GFF284 0.52 -0.9
319,725 + GFF284 0.52 +0.1
319,725 + GFF284 0.52 +0.3
319,726 - GFF284 0.53 -1.2
319,726 - GFF284 0.53 +0.9
319,726 - GFF284 0.53 -0.1
319,726 - GFF284 0.53 -0.2
319,726 - GFF284 0.53 +0.4
319,726 - GFF284 0.53 -0.1
319,726 - GFF284 0.53 -0.7
319,726 - GFF284 0.53 +0.4
319,826 - GFF284 0.64 +0.8
319,911 + GFF284 0.73 +0.2
319,911 + GFF284 0.73 +0.3
319,911 + GFF284 0.73 -2.6
319,912 - GFF284 0.73 -0.6
319,912 - GFF284 0.73 -1.7
319,912 - GFF284 0.73 +0.9
319,912 - GFF284 0.73 +0.6
319,912 - GFF284 0.73 -0.1
319,912 - GFF284 0.73 +0.8
319,936 - GFF284 0.76 -0.6
319,936 - GFF284 0.76 +0.7
320,001 + GFF284 0.83 +1.0
320,001 + GFF284 0.83 -0.2
320,001 + GFF284 0.83 +0.4
320,001 + GFF284 0.83 -0.7
320,001 + GFF284 0.83 -1.1
320,002 - GFF284 0.83 +0.7
320,002 - GFF284 0.83 +0.6
320,002 - GFF284 0.83 +0.8
320,002 - GFF284 0.83 -1.0
320,210 - +0.1
320,340 + GFF285 0.17 +2.4
320,340 + GFF285 0.17 -0.7
320,341 - GFF285 0.17 -0.4
320,772 + GFF285 0.68 -0.2
320,773 - GFF285 0.69 -0.1
320,773 - GFF285 0.69 -1.0
320,773 - GFF285 0.69 -1.5
320,773 - GFF285 0.69 +0.2
321,052 + +0.5
321,053 - -1.1
321,053 - +2.1
321,053 - -0.2
321,053 - -0.8
321,053 - -0.2
321,053 - +0.4
321,053 - +0.0
321,085 + -0.3
321,085 + +3.4
321,085 + +0.7
321,085 + -0.2
321,085 + -0.9
321,085 + -0.1
321,086 - +1.1
321,086 - -1.1
321,086 - -0.3
321,170 + +0.9
321,170 + -0.6
321,171 - +1.4
321,171 - -1.6
321,171 - +0.9
321,224 + -0.5
321,224 + +0.7
321,224 + +1.0
321,224 + -0.3
321,224 + +0.2
321,224 + +0.7
321,224 + +1.4
321,225 - -0.9
321,225 - -1.3
321,225 - +0.1
321,225 - +0.7
321,225 - -0.0
321,225 - -0.1
321,225 - +0.4
321,225 - +0.4
321,225 - -0.9
321,282 + GFF286 0.15 -0.0
321,282 + GFF286 0.15 +2.2
321,282 + GFF286 0.15 -0.2
321,282 + GFF286 0.15 +0.8
321,283 - GFF286 0.15 -1.1
321,283 - GFF286 0.15 +0.5
321,314 + GFF286 0.18 -1.5
321,314 + GFF286 0.18 +0.8
321,314 + GFF286 0.18 +0.8
321,314 + GFF286 0.18 +0.7
321,488 + GFF286 0.38 -0.3
321,489 - GFF286 0.38 -0.2
321,489 - GFF286 0.38 -0.8
321,489 - GFF286 0.38 -1.6
321,490 - GFF286 0.38 +1.7
321,638 + GFF286 0.55 -1.1
321,638 + GFF286 0.55 +0.3
321,638 + GFF286 0.55 -1.8
321,639 - GFF286 0.55 +0.8
321,764 + GFF286 0.69 -0.9
321,765 - GFF286 0.69 +0.1
321,923 + GFF286 0.87 +0.8
321,923 + GFF286 0.87 +0.7
321,923 + GFF286 0.87 -0.3
321,924 - GFF286 0.87 -0.9
321,924 - GFF286 0.87 +1.0
321,924 - GFF286 0.87 +0.8
321,962 + -0.2
321,962 + -0.5
321,962 + -0.2
321,963 - +0.3
321,963 - -1.4

Or see this region's nucleotide sequence