Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2741 and GFF2742 are separated by 5 nucleotides GFF2742 and GFF2743 are separated by 91 nucleotides GFF2743 and GFF2744 are separated by 94 nucleotides GFF2744 and GFF2745 overlap by 4 nucleotides
GFF2741 - FIG002207: Probable transmembrane protein, at 176,456 to 177,547
GFF2741
GFF2742 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 177,553 to 178,329
GFF2742
GFF2743 - hypothetical protein, at 178,421 to 178,726
GFF2743
GFF2744 - FIG00932369: hypothetical protein, at 178,821 to 179,321
GFF2744
GFF2745 - FIG074102: hypothetical protein, at 179,318 to 180,460
GFF2745
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.625 kb on - strand, within GFF2741 at 176.661 kb on - strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.323 kb on + strand, within GFF2741 at 177.324 kb on - strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.335 kb on + strand, within GFF2741 at 177.336 kb on - strand, within GFF2741 at 177.336 kb on - strand, within GFF2741 at 177.545 kb on + strand at 177.546 kb on - strand at 177.546 kb on - strand at 177.713 kb on + strand, within GFF2742 at 177.714 kb on - strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.989 kb on + strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 177.990 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.088 kb on - strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.123 kb on + strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.124 kb on - strand, within GFF2742 at 178.359 kb on + strand at 178.359 kb on + strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.360 kb on - strand at 178.368 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.423 kb on - strand at 178.423 kb on - strand at 178.768 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.778 kb on + strand at 178.779 kb on - strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.790 kb on + strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.791 kb on - strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.822 kb on + strand at 178.823 kb on - strand at 178.823 kb on - strand at 178.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 176,625 - GFF2741 0.15 -0.8 176,661 - GFF2741 0.19 +0.2 177,323 + GFF2741 0.79 -1.2 177,323 + GFF2741 0.79 -0.7 177,323 + GFF2741 0.79 -0.1 177,323 + GFF2741 0.79 +0.1 177,324 - GFF2741 0.79 -0.4 177,335 + GFF2741 0.80 +1.8 177,335 + GFF2741 0.80 -0.2 177,335 + GFF2741 0.80 -0.2 177,336 - GFF2741 0.81 +0.7 177,336 - GFF2741 0.81 -1.1 177,545 + -0.0 177,546 - -0.4 177,546 - -0.5 177,713 + GFF2742 0.21 -0.1 177,714 - GFF2742 0.21 +1.0 177,989 + GFF2742 0.56 -0.6 177,989 + GFF2742 0.56 -0.3 177,989 + GFF2742 0.56 +0.7 177,990 - GFF2742 0.56 -1.1 177,990 - GFF2742 0.56 +1.7 178,088 - GFF2742 0.69 +1.0 178,088 - GFF2742 0.69 +0.4 178,123 + GFF2742 0.73 -0.7 178,123 + GFF2742 0.73 -1.1 178,123 + GFF2742 0.73 -0.7 178,124 - GFF2742 0.73 -0.1 178,124 - GFF2742 0.73 +1.8 178,124 - GFF2742 0.73 +0.7 178,124 - GFF2742 0.73 -0.5 178,124 - GFF2742 0.73 +0.2 178,124 - GFF2742 0.73 +1.7 178,124 - GFF2742 0.73 -1.5 178,124 - GFF2742 0.73 -0.5 178,124 - GFF2742 0.73 -0.2 178,359 + +2.8 178,359 + +0.7 178,360 - -1.0 178,360 - +0.8 178,360 - -0.7 178,360 - -0.9 178,368 + -0.6 178,422 + -0.5 178,422 + -0.3 178,422 + -0.7 178,422 + +1.2 178,422 + -1.0 178,422 + +0.1 178,423 - +0.1 178,423 - -0.8 178,768 + -0.4 178,778 + -0.1 178,778 + +1.6 178,778 + -0.2 178,779 - -1.5 178,790 + -2.1 178,790 + -0.3 178,790 + -1.2 178,790 + -0.4 178,790 + +0.6 178,790 + -0.6 178,790 + -0.4 178,791 - +1.7 178,791 - -0.2 178,791 - -2.6 178,791 - +0.0 178,791 - -0.9 178,791 - +0.8 178,822 + +0.9 178,822 + -1.7 178,822 + -0.0 178,822 + -0.2 178,822 + +0.9 178,822 + -0.1 178,822 + -0.6 178,822 + -0.1 178,823 - +0.4 178,823 - -0.7 178,823 - -0.6
Or see this region's nucleotide sequence