Strain Fitness in Variovorax sp. SCN45 around GFF2633

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2631 and GFF2632 are separated by 32 nucleotidesGFF2632 and GFF2633 are separated by 149 nucleotidesGFF2633 and GFF2634 are separated by 70 nucleotidesGFF2634 and GFF2635 are separated by 12 nucleotides GFF2631 - Transcriptional regulator, ArsR family, at 43,348 to 43,809 GFF2631 GFF2632 - no description, at 43,842 to 44,387 GFF2632 GFF2633 - Proline iminopeptidase (EC 3.4.11.5), at 44,537 to 45,490 GFF2633 GFF2634 - FIG00464095: hypothetical protein, at 45,561 to 45,983 GFF2634 GFF2635 - hypothetical protein, at 45,996 to 48,956 GFF2635 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 43.820 kb on - strandat 43.909 kb on + strand, within GFF2632at 43.909 kb on + strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 44.101 kb on + strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.324 kb on - strand, within GFF2632at 44.324 kb on - strand, within GFF2632at 44.336 kb on - strandat 44.336 kb on - strandat 44.345 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.559 kb on - strandat 44.559 kb on - strandat 44.576 kb on + strandat 44.576 kb on + strandat 44.576 kb on + strandat 44.577 kb on - strandat 44.621 kb on + strandat 44.622 kb on - strandat 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.726 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.951 kb on + strand, within GFF2633at 44.952 kb on - strand, within GFF2633at 44.952 kb on - strand, within GFF2633at 44.981 kb on + strand, within GFF2633at 44.981 kb on + strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.982 kb on - strand, within GFF2633at 44.984 kb on + strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 44.985 kb on - strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.082 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.242 kb on + strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.243 kb on - strand, within GFF2633at 45.335 kb on + strand, within GFF2633at 45.428 kb on + strandat 45.428 kb on + strandat 45.429 kb on - strandat 45.429 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.514 kb on - strandat 45.649 kb on - strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.801 kb on + strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.802 kb on - strand, within GFF2634at 45.868 kb on + strand, within GFF2634at 45.879 kb on + strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.880 kb on - strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.897 kb on + strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.898 kb on - strand, within GFF2634at 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.981 kb on + strandat 45.982 kb on - strandat 46.432 kb on + strand, within GFF2635at 46.433 kb on - strand, within GFF2635at 46.457 kb on + strand, within GFF2635at 46.458 kb on - strand, within GFF2635

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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43,820 - -0.6
43,909 + GFF2632 0.12 -0.8
43,909 + GFF2632 0.12 -0.1
43,910 - GFF2632 0.12 -0.4
43,910 - GFF2632 0.12 -0.7
43,910 - GFF2632 0.12 -0.8
43,910 - GFF2632 0.12 -0.3
43,910 - GFF2632 0.12 -1.1
44,101 + GFF2632 0.47 -1.7
44,102 - GFF2632 0.48 -0.8
44,102 - GFF2632 0.48 -1.1
44,102 - GFF2632 0.48 -0.5
44,102 - GFF2632 0.48 -0.3
44,102 - GFF2632 0.48 -0.7
44,102 - GFF2632 0.48 -0.0
44,102 - GFF2632 0.48 +0.1
44,102 - GFF2632 0.48 -0.8
44,323 + GFF2632 0.88 -0.0
44,323 + GFF2632 0.88 -0.1
44,323 + GFF2632 0.88 -0.5
44,324 - GFF2632 0.88 +0.1
44,324 - GFF2632 0.88 +1.4
44,336 - +1.1
44,336 - -0.7
44,345 + -0.7
44,487 + +0.8
44,487 + +0.3
44,487 + -0.7
44,487 + -1.5
44,487 + +0.5
44,487 + -0.0
44,488 - +1.4
44,488 - -2.3
44,488 - -2.7
44,488 - -0.9
44,488 - -0.5
44,488 - -0.1
44,559 - +0.6
44,559 - -1.1
44,576 + -0.3
44,576 + +1.2
44,576 + -0.8
44,577 - -0.7
44,621 + -0.1
44,622 - +0.5
44,702 - GFF2633 0.17 -0.7
44,702 - GFF2633 0.17 -1.0
44,702 - GFF2633 0.17 -2.5
44,702 - GFF2633 0.17 +0.3
44,702 - GFF2633 0.17 -0.2
44,726 + GFF2633 0.20 -1.5
44,951 + GFF2633 0.43 +0.3
44,951 + GFF2633 0.43 +0.2
44,951 + GFF2633 0.43 +1.0
44,951 + GFF2633 0.43 +0.0
44,952 - GFF2633 0.44 -0.8
44,952 - GFF2633 0.44 -0.9
44,981 + GFF2633 0.47 -0.8
44,981 + GFF2633 0.47 +1.5
44,982 - GFF2633 0.47 -0.3
44,982 - GFF2633 0.47 -0.6
44,982 - GFF2633 0.47 -0.0
44,984 + GFF2633 0.47 -0.2
44,985 - GFF2633 0.47 -2.0
44,985 - GFF2633 0.47 +0.2
44,985 - GFF2633 0.47 -1.5
44,985 - GFF2633 0.47 +1.2
45,082 + GFF2633 0.57 -1.9
45,082 + GFF2633 0.57 -0.7
45,082 + GFF2633 0.57 +0.7
45,242 + GFF2633 0.74 -0.9
45,242 + GFF2633 0.74 -0.1
45,243 - GFF2633 0.74 -0.4
45,243 - GFF2633 0.74 -0.0
45,243 - GFF2633 0.74 -1.1
45,243 - GFF2633 0.74 -1.1
45,243 - GFF2633 0.74 -0.3
45,335 + GFF2633 0.84 -0.3
45,428 + +1.1
45,428 + -1.5
45,429 - +0.9
45,429 - -0.8
45,514 - -0.4
45,514 - -0.3
45,514 - -2.1
45,649 - GFF2634 0.21 -0.8
45,801 + GFF2634 0.57 -0.3
45,801 + GFF2634 0.57 -1.7
45,801 + GFF2634 0.57 +0.7
45,801 + GFF2634 0.57 -0.4
45,801 + GFF2634 0.57 -0.4
45,801 + GFF2634 0.57 -0.2
45,802 - GFF2634 0.57 +0.9
45,802 - GFF2634 0.57 +0.7
45,802 - GFF2634 0.57 -0.8
45,802 - GFF2634 0.57 -0.5
45,868 + GFF2634 0.73 +0.5
45,879 + GFF2634 0.75 -0.5
45,880 - GFF2634 0.75 +0.7
45,880 - GFF2634 0.75 -0.2
45,897 + GFF2634 0.79 -1.1
45,897 + GFF2634 0.79 -0.6
45,897 + GFF2634 0.79 -0.1
45,897 + GFF2634 0.79 -0.7
45,897 + GFF2634 0.79 +0.1
45,897 + GFF2634 0.79 -0.3
45,897 + GFF2634 0.79 -1.1
45,898 - GFF2634 0.80 -0.8
45,898 - GFF2634 0.80 -1.0
45,898 - GFF2634 0.80 -0.3
45,898 - GFF2634 0.80 -0.2
45,981 + -0.1
45,981 + -0.3
45,981 + -1.6
45,981 + -1.0
45,981 + -0.2
45,982 - +1.0
46,432 + GFF2635 0.15 -0.5
46,433 - GFF2635 0.15 +0.1
46,457 + GFF2635 0.16 +0.7
46,458 - GFF2635 0.16 +1.7

Or see this region's nucleotide sequence