Strain Fitness in Variovorax sp. SCN45 around GFF261

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF259 and GFF260 are separated by 29 nucleotidesGFF260 and GFF261 are separated by 191 nucleotidesGFF261 and GFF262 are separated by 71 nucleotidesGFF262 and GFF263 are separated by 196 nucleotides GFF259 - Bis-ABC ATPase YheS, at 291,309 to 293,309 GFF259 GFF260 - FIG00931356: hypothetical protein, at 293,339 to 293,842 GFF260 GFF261 - no description, at 294,034 to 294,267 GFF261 GFF262 - Phage repressor protein cI, at 294,339 to 295,055 GFF262 GFF263 - Secreted and surface protein containing fasciclin-like repeats, at 295,252 to 295,812 GFF263 Position (kb) 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.699 kb on + strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.700 kb on - strand, within GFF260at 293.811 kb on + strandat 293.811 kb on + strandat 293.812 kb on - strandat 294.062 kb on + strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.063 kb on - strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.107 kb on + strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.108 kb on - strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.128 kb on + strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.129 kb on - strand, within GFF261at 294.247 kb on + strandat 294.247 kb on + strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.248 kb on - strandat 294.292 kb on - strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.296 kb on + strandat 294.297 kb on - strandat 294.297 kb on - strandat 294.297 kb on - strandat 294.312 kb on + strandat 294.312 kb on + strandat 294.326 kb on + strandat 294.327 kb on - strandat 294.327 kb on - strandat 294.327 kb on - strandat 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.639 kb on + strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.640 kb on - strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.774 kb on + strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.775 kb on - strand, within GFF262at 294.832 kb on - strand, within GFF262at 294.832 kb on - strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.939 kb on + strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.940 kb on - strand, within GFF262at 294.997 kb on + strandat 294.997 kb on + strandat 294.997 kb on + strandat 294.997 kb on + strandat 294.997 kb on + strandat 294.997 kb on + strandat 294.997 kb on + strandat 294.998 kb on - strandat 294.998 kb on - strandat 295.178 kb on + strandat 295.179 kb on - strandat 295.179 kb on - strandat 295.179 kb on - strandat 295.220 kb on + strandat 295.220 kb on + strandat 295.220 kb on + strandat 295.220 kb on + strandat 295.220 kb on + strandat 295.220 kb on + strandat 295.221 kb on - strandat 295.221 kb on - strandat 295.231 kb on + strandat 295.231 kb on + strandat 295.231 kb on + strandat 295.232 kb on - strandat 295.232 kb on - strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.253 kb on + strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strandat 295.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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293,699 + GFF260 0.71 +0.8
293,699 + GFF260 0.71 -0.3
293,699 + GFF260 0.71 +0.5
293,699 + GFF260 0.71 +1.4
293,699 + GFF260 0.71 -2.1
293,699 + GFF260 0.71 +0.4
293,699 + GFF260 0.71 +0.7
293,699 + GFF260 0.71 +1.4
293,699 + GFF260 0.71 -1.1
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 +0.8
293,699 + GFF260 0.71 -0.2
293,699 + GFF260 0.71 -0.4
293,699 + GFF260 0.71 -0.7
293,699 + GFF260 0.71 +1.0
293,699 + GFF260 0.71 +0.4
293,699 + GFF260 0.71 -0.5
293,699 + GFF260 0.71 -0.1
293,699 + GFF260 0.71 -1.3
293,699 + GFF260 0.71 -0.9
293,699 + GFF260 0.71 +0.3
293,699 + GFF260 0.71 -0.2
293,699 + GFF260 0.71 -0.5
293,699 + GFF260 0.71 -2.1
293,699 + GFF260 0.71 -0.6
293,700 - GFF260 0.72 -0.2
293,700 - GFF260 0.72 +0.1
293,700 - GFF260 0.72 +1.4
293,700 - GFF260 0.72 -0.1
293,700 - GFF260 0.72 -0.2
293,700 - GFF260 0.72 +3.1
293,700 - GFF260 0.72 -0.9
293,700 - GFF260 0.72 -0.1
293,700 - GFF260 0.72 +0.3
293,700 - GFF260 0.72 +0.4
293,700 - GFF260 0.72 +0.7
293,700 - GFF260 0.72 +0.5
293,700 - GFF260 0.72 -1.3
293,811 + +2.2
293,811 + +2.4
293,812 - -0.6
294,062 + GFF261 0.12 +0.3
294,063 - GFF261 0.12 -2.2
294,063 - GFF261 0.12 -0.8
294,063 - GFF261 0.12 +2.8
294,063 - GFF261 0.12 +0.6
294,063 - GFF261 0.12 -0.6
294,063 - GFF261 0.12 +0.4
294,063 - GFF261 0.12 -1.5
294,063 - GFF261 0.12 +0.3
294,063 - GFF261 0.12 +2.0
294,107 + GFF261 0.31 -0.7
294,107 + GFF261 0.31 -0.0
294,107 + GFF261 0.31 +2.0
294,107 + GFF261 0.31 -0.7
294,107 + GFF261 0.31 -0.4
294,108 - GFF261 0.32 -0.5
294,108 - GFF261 0.32 +0.7
294,108 - GFF261 0.32 +1.8
294,108 - GFF261 0.32 -0.6
294,108 - GFF261 0.32 +0.4
294,108 - GFF261 0.32 +0.1
294,108 - GFF261 0.32 +0.2
294,108 - GFF261 0.32 -0.0
294,128 + GFF261 0.40 -0.6
294,128 + GFF261 0.40 -1.0
294,129 - GFF261 0.41 +0.3
294,129 - GFF261 0.41 +1.0
294,129 - GFF261 0.41 -0.5
294,129 - GFF261 0.41 +0.7
294,129 - GFF261 0.41 -0.1
294,129 - GFF261 0.41 +0.6
294,129 - GFF261 0.41 +0.5
294,247 + +0.5
294,247 + -0.3
294,248 - -1.2
294,248 - -0.1
294,248 - +1.0
294,292 - -0.4
294,296 + -0.6
294,296 + -0.8
294,296 + +0.4
294,296 + -0.4
294,297 - -0.6
294,297 - -0.4
294,297 - -1.0
294,312 + +2.2
294,312 + +0.6
294,326 + -0.4
294,327 - +0.7
294,327 - +0.2
294,327 - -0.2
294,639 + GFF262 0.42 -0.7
294,639 + GFF262 0.42 -0.2
294,639 + GFF262 0.42 -1.4
294,639 + GFF262 0.42 -0.6
294,639 + GFF262 0.42 +0.2
294,639 + GFF262 0.42 -0.3
294,639 + GFF262 0.42 -0.2
294,639 + GFF262 0.42 +0.1
294,639 + GFF262 0.42 -2.1
294,640 - GFF262 0.42 -1.2
294,640 - GFF262 0.42 -2.4
294,640 - GFF262 0.42 +0.5
294,640 - GFF262 0.42 +0.1
294,640 - GFF262 0.42 -0.0
294,640 - GFF262 0.42 +0.1
294,640 - GFF262 0.42 -0.8
294,640 - GFF262 0.42 +0.9
294,640 - GFF262 0.42 -0.7
294,640 - GFF262 0.42 +0.4
294,640 - GFF262 0.42 +0.1
294,640 - GFF262 0.42 -0.6
294,640 - GFF262 0.42 +0.6
294,640 - GFF262 0.42 -0.3
294,640 - GFF262 0.42 -0.8
294,640 - GFF262 0.42 +0.2
294,640 - GFF262 0.42 +1.4
294,774 + GFF262 0.61 +1.4
294,774 + GFF262 0.61 -0.7
294,774 + GFF262 0.61 +1.8
294,774 + GFF262 0.61 +1.0
294,774 + GFF262 0.61 -0.4
294,774 + GFF262 0.61 -2.5
294,774 + GFF262 0.61 +0.5
294,774 + GFF262 0.61 +1.2
294,774 + GFF262 0.61 +0.7
294,774 + GFF262 0.61 +0.3
294,774 + GFF262 0.61 -0.7
294,774 + GFF262 0.61 -0.6
294,774 + GFF262 0.61 +2.7
294,774 + GFF262 0.61 -0.0
294,775 - GFF262 0.61 -0.6
294,775 - GFF262 0.61 +0.2
294,775 - GFF262 0.61 +0.5
294,775 - GFF262 0.61 +0.0
294,775 - GFF262 0.61 -1.4
294,775 - GFF262 0.61 +1.0
294,775 - GFF262 0.61 +0.4
294,775 - GFF262 0.61 -1.2
294,775 - GFF262 0.61 -2.6
294,775 - GFF262 0.61 -0.1
294,775 - GFF262 0.61 +0.6
294,775 - GFF262 0.61 -2.1
294,775 - GFF262 0.61 -0.1
294,832 - GFF262 0.69 -0.2
294,832 - GFF262 0.69 -0.8
294,939 + GFF262 0.84 -1.2
294,939 + GFF262 0.84 +0.2
294,939 + GFF262 0.84 +0.5
294,939 + GFF262 0.84 -0.6
294,939 + GFF262 0.84 +0.7
294,939 + GFF262 0.84 +0.4
294,939 + GFF262 0.84 +0.1
294,939 + GFF262 0.84 -0.3
294,939 + GFF262 0.84 -0.4
294,939 + GFF262 0.84 -0.6
294,939 + GFF262 0.84 -0.6
294,939 + GFF262 0.84 +0.9
294,939 + GFF262 0.84 +0.8
294,939 + GFF262 0.84 -0.8
294,940 - GFF262 0.84 +0.4
294,940 - GFF262 0.84 +0.9
294,940 - GFF262 0.84 -2.1
294,940 - GFF262 0.84 -0.4
294,940 - GFF262 0.84 +0.7
294,940 - GFF262 0.84 -0.0
294,997 + +1.2
294,997 + -0.3
294,997 + -0.2
294,997 + -0.6
294,997 + -1.0
294,997 + -0.7
294,997 + -1.5
294,998 - +0.0
294,998 - -0.4
295,178 + -1.4
295,179 - -0.2
295,179 - +0.4
295,179 - -0.3
295,220 + -0.1
295,220 + -0.7
295,220 + -0.5
295,220 + -1.0
295,220 + +1.7
295,220 + -2.5
295,221 - +0.8
295,221 - -1.0
295,231 + -1.0
295,231 + -0.7
295,231 + -0.0
295,232 - +0.4
295,232 - +1.1
295,253 + -0.4
295,253 + +2.4
295,253 + -1.1
295,253 + -0.6
295,253 + +0.1
295,253 + -0.3
295,253 + -0.3
295,253 + +0.3
295,253 + -0.7
295,253 + +0.3
295,253 + -0.1
295,253 + +0.8
295,253 + +1.4
295,253 + -1.6
295,253 + -0.7
295,254 - +0.5
295,254 - -0.5
295,254 - -1.4
295,254 - -0.3
295,254 - -0.6
295,254 - -0.9
295,254 - +0.2
295,254 - -1.4
295,254 - -0.6
295,254 - +0.1
295,254 - -0.7

Or see this region's nucleotide sequence