Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2608 and GFF2609 overlap by 8 nucleotides GFF2609 and GFF2610 overlap by 1 nucleotides GFF2610 and GFF2611 are separated by 33 nucleotides
GFF2608 - Transcriptional regulator FrcR for fructose utilization, ROK family, at 12,901 to 14,124
GFF2608
GFF2609 - Fructose ABC transporter, ATP-binding component FrcA, at 14,117 to 14,914
GFF2609
GFF2610 - Fructose ABC transporter, permease component FrcC, at 14,914 to 15,873
GFF2610
GFF2611 - Fructose ABC transporter, substrate-binding component FrcB, at 15,907 to 16,914
GFF2611
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.233 kb on - strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.437 kb on - strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.748 kb on + strand, within GFF2608 at 13.749 kb on - strand, within GFF2608 at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.643 kb on + strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.856 kb on + strand at 14.857 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 15.200 kb on + strand, within GFF2610 at 15.200 kb on + strand, within GFF2610 at 15.200 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.294 kb on - strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.345 kb on - strand, within GFF2610 at 15.345 kb on - strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.459 kb on - strand, within GFF2610 at 15.459 kb on - strand, within GFF2610 at 15.797 kb on - strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 13,233 - GFF2608 0.27 -3.6 13,428 + GFF2608 0.43 +0.8 13,428 + GFF2608 0.43 +0.1 13,437 - GFF2608 0.44 -1.1 13,442 + GFF2608 0.44 +0.9 13,442 + GFF2608 0.44 -0.2 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.1 13,442 + GFF2608 0.44 -0.8 13,442 + GFF2608 0.44 -1.8 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 +0.0 13,442 + GFF2608 0.44 +0.9 13,442 + GFF2608 0.44 -0.1 13,443 - GFF2608 0.44 +1.1 13,443 - GFF2608 0.44 +0.1 13,443 - GFF2608 0.44 +1.3 13,443 - GFF2608 0.44 -2.4 13,443 - GFF2608 0.44 +1.1 13,443 - GFF2608 0.44 +0.8 13,443 - GFF2608 0.44 -0.2 13,748 + GFF2608 0.69 +1.1 13,749 - GFF2608 0.69 -1.2 14,118 + +0.3 14,118 + +1.1 14,118 + +0.3 14,118 + -2.2 14,607 + GFF2609 0.61 +0.2 14,607 + GFF2609 0.61 -2.7 14,607 + GFF2609 0.61 -0.6 14,643 + GFF2609 0.66 -1.5 14,644 - GFF2609 0.66 +0.4 14,644 - GFF2609 0.66 -1.9 14,856 + +0.6 14,857 - +1.7 14,991 - -0.6 14,991 - -0.4 14,991 - -0.9 15,200 + GFF2610 0.30 -0.5 15,200 + GFF2610 0.30 -0.4 15,200 + GFF2610 0.30 -0.8 15,221 + GFF2610 0.32 -0.9 15,221 + GFF2610 0.32 -0.1 15,221 + GFF2610 0.32 -0.8 15,221 + GFF2610 0.32 +0.7 15,221 + GFF2610 0.32 +0.1 15,221 + GFF2610 0.32 +0.1 15,221 + GFF2610 0.32 +0.7 15,221 + GFF2610 0.32 +0.2 15,221 + GFF2610 0.32 -0.8 15,222 - GFF2610 0.32 -0.7 15,222 - GFF2610 0.32 +2.0 15,222 - GFF2610 0.32 -1.3 15,293 + GFF2610 0.39 -0.3 15,293 + GFF2610 0.39 -0.0 15,293 + GFF2610 0.39 -0.2 15,293 + GFF2610 0.39 -0.8 15,293 + GFF2610 0.39 +0.1 15,293 + GFF2610 0.39 -0.5 15,293 + GFF2610 0.39 +0.4 15,294 - GFF2610 0.40 -2.8 15,344 + GFF2610 0.45 -0.6 15,344 + GFF2610 0.45 -0.1 15,344 + GFF2610 0.45 -1.1 15,345 - GFF2610 0.45 -1.9 15,345 - GFF2610 0.45 -1.9 15,458 + GFF2610 0.57 -1.3 15,458 + GFF2610 0.57 +0.2 15,458 + GFF2610 0.57 -0.1 15,459 - GFF2610 0.57 -0.8 15,459 - GFF2610 0.57 -1.1 15,797 - +0.8 15,908 + -1.1 15,908 + -0.2 15,908 + -1.0 15,908 + -1.1 15,908 + -1.5 15,909 - +0.3 15,909 - +0.8 15,909 - +0.4 15,909 - -1.3 15,909 - -0.7
Or see this region's nucleotide sequence