Strain Fitness in Variovorax sp. SCN45 around GFF2582

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2580 and GFF2581 are separated by 21 nucleotidesGFF2581 and GFF2582 are separated by 78 nucleotidesGFF2582 and GFF2583 are separated by 69 nucleotidesGFF2583 and GFF2584 are separated by 16 nucleotides GFF2580 - L-aspartate oxidase (EC 1.4.3.16), at 636,515 to 638,101 GFF2580 GFF2581 - Segregation and condensation protein A, at 638,123 to 638,959 GFF2581 GFF2582 - Uncharacterized DUF3460-containg protein Bmul_0854, at 639,038 to 639,244 GFF2582 GFF2583 - putative lipoprotein, at 639,314 to 639,790 GFF2583 GFF2584 - Sulfate permease, at 639,807 to 641,486 GFF2584 Position (kb) 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 638.137 kb on - strandat 638.137 kb on - strandat 638.982 kb on + strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.040 kb on - strandat 639.058 kb on - strandat 639.058 kb on - strandat 639.063 kb on + strand, within GFF2582at 639.063 kb on + strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.064 kb on - strand, within GFF2582at 639.093 kb on + strand, within GFF2582at 639.093 kb on + strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.094 kb on - strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.219 kb on + strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.220 kb on - strand, within GFF2582at 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.244 kb on + strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.245 kb on - strandat 639.257 kb on + strandat 639.258 kb on - strandat 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.476 kb on + strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.477 kb on - strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.506 kb on + strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.507 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.648 kb on - strand, within GFF2583at 639.775 kb on + strandat 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.979 kb on + strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 639.980 kb on - strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.087 kb on + strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.088 kb on - strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.096 kb on + strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.097 kb on - strand, within GFF2584at 640.183 kb on - strand, within GFF2584at 640.184 kb on + strand, within GFF2584

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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638,137 - -0.6
638,137 - +0.8
638,982 + -0.6
639,040 - -0.9
639,040 - -2.0
639,040 - -1.0
639,040 - +1.1
639,040 - -1.2
639,058 - -0.8
639,058 - -1.1
639,063 + GFF2582 0.12 -0.4
639,063 + GFF2582 0.12 -1.2
639,064 - GFF2582 0.13 +0.2
639,064 - GFF2582 0.13 -1.0
639,064 - GFF2582 0.13 -2.1
639,064 - GFF2582 0.13 -1.8
639,064 - GFF2582 0.13 -1.4
639,064 - GFF2582 0.13 -0.6
639,064 - GFF2582 0.13 -1.0
639,064 - GFF2582 0.13 -1.0
639,093 + GFF2582 0.27 -0.3
639,093 + GFF2582 0.27 -0.8
639,094 - GFF2582 0.27 -2.3
639,094 - GFF2582 0.27 +0.8
639,094 - GFF2582 0.27 -0.9
639,219 + GFF2582 0.87 +0.2
639,219 + GFF2582 0.87 +1.8
639,219 + GFF2582 0.87 -2.5
639,219 + GFF2582 0.87 +1.7
639,220 - GFF2582 0.88 -1.4
639,220 - GFF2582 0.88 -1.4
639,220 - GFF2582 0.88 -1.6
639,220 - GFF2582 0.88 -0.3
639,220 - GFF2582 0.88 -0.6
639,220 - GFF2582 0.88 -2.6
639,220 - GFF2582 0.88 -1.0
639,220 - GFF2582 0.88 -1.8
639,244 + -1.0
639,244 + -3.0
639,244 + +0.2
639,244 + -0.7
639,244 + -3.1
639,245 - -1.6
639,245 - +0.8
639,245 - -1.8
639,245 - +1.6
639,245 - -1.6
639,245 - -2.1
639,245 - -1.2
639,245 - -1.1
639,245 - +0.8
639,245 - -0.5
639,245 - -1.9
639,245 - -2.6
639,245 - -0.9
639,245 - -2.3
639,257 + -1.4
639,258 - -2.4
639,476 + GFF2583 0.34 -0.5
639,476 + GFF2583 0.34 -1.4
639,476 + GFF2583 0.34 +0.2
639,476 + GFF2583 0.34 -0.4
639,476 + GFF2583 0.34 -1.2
639,476 + GFF2583 0.34 +0.3
639,476 + GFF2583 0.34 +0.4
639,476 + GFF2583 0.34 +0.6
639,476 + GFF2583 0.34 +0.0
639,477 - GFF2583 0.34 +0.9
639,477 - GFF2583 0.34 -0.3
639,477 - GFF2583 0.34 +0.2
639,477 - GFF2583 0.34 +0.2
639,506 + GFF2583 0.40 +1.3
639,506 + GFF2583 0.40 -0.9
639,506 + GFF2583 0.40 +2.5
639,506 + GFF2583 0.40 +0.4
639,506 + GFF2583 0.40 -0.2
639,506 + GFF2583 0.40 -0.6
639,506 + GFF2583 0.40 +0.2
639,506 + GFF2583 0.40 +0.8
639,506 + GFF2583 0.40 +0.2
639,506 + GFF2583 0.40 -0.1
639,506 + GFF2583 0.40 -0.2
639,506 + GFF2583 0.40 -1.8
639,506 + GFF2583 0.40 -0.2
639,506 + GFF2583 0.40 +0.3
639,506 + GFF2583 0.40 -0.0
639,506 + GFF2583 0.40 -0.5
639,506 + GFF2583 0.40 +3.1
639,506 + GFF2583 0.40 -0.4
639,506 + GFF2583 0.40 +0.3
639,506 + GFF2583 0.40 +0.1
639,507 - GFF2583 0.40 +0.6
639,507 - GFF2583 0.40 +0.1
639,507 - GFF2583 0.40 +0.5
639,507 - GFF2583 0.40 +0.3
639,507 - GFF2583 0.40 +0.8
639,507 - GFF2583 0.40 +1.3
639,507 - GFF2583 0.40 +2.8
639,507 - GFF2583 0.40 +0.7
639,507 - GFF2583 0.40 +0.6
639,507 - GFF2583 0.40 +0.3
639,507 - GFF2583 0.40 -0.9
639,507 - GFF2583 0.40 -1.5
639,507 - GFF2583 0.40 -0.1
639,507 - GFF2583 0.40 -0.9
639,507 - GFF2583 0.40 +0.6
639,507 - GFF2583 0.40 -0.4
639,507 - GFF2583 0.40 -1.4
639,507 - GFF2583 0.40 +0.5
639,507 - GFF2583 0.40 +0.6
639,507 - GFF2583 0.40 +0.4
639,648 - GFF2583 0.70 -0.6
639,648 - GFF2583 0.70 +2.1
639,648 - GFF2583 0.70 -0.6
639,775 + +0.3
639,979 + GFF2584 0.10 -1.2
639,979 + GFF2584 0.10 -1.1
639,979 + GFF2584 0.10 +0.2
639,979 + GFF2584 0.10 +0.2
639,979 + GFF2584 0.10 +0.0
639,980 - GFF2584 0.10 -2.1
639,980 - GFF2584 0.10 -0.7
639,980 - GFF2584 0.10 +0.3
640,087 + GFF2584 0.17 -0.8
640,087 + GFF2584 0.17 +0.1
640,087 + GFF2584 0.17 +0.1
640,088 - GFF2584 0.17 -0.6
640,088 - GFF2584 0.17 -1.8
640,088 - GFF2584 0.17 -0.4
640,096 + GFF2584 0.17 -0.5
640,096 + GFF2584 0.17 -1.2
640,096 + GFF2584 0.17 -2.3
640,096 + GFF2584 0.17 +0.4
640,096 + GFF2584 0.17 +0.5
640,096 + GFF2584 0.17 +0.6
640,096 + GFF2584 0.17 -1.6
640,096 + GFF2584 0.17 -1.5
640,096 + GFF2584 0.17 -1.4
640,097 - GFF2584 0.17 -1.5
640,097 - GFF2584 0.17 -0.8
640,097 - GFF2584 0.17 -0.1
640,183 - GFF2584 0.22 -0.5
640,184 + GFF2584 0.22 -0.2

Or see this region's nucleotide sequence