Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2397 and GFF2398 are separated by 49 nucleotides GFF2398 and GFF2399 are separated by 1 nucleotides
GFF2397 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 447,762 to 449,456
GFF2397
GFF2398 - Uncharacterized MFS-type transporter, at 449,506 to 450,933
GFF2398
GFF2399 - TonB-dependent receptor, at 450,935 to 453,469
GFF2399
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 448.579 kb on + strand, within GFF2397 at 448.580 kb on - strand, within GFF2397 at 448.780 kb on + strand, within GFF2397 at 448.928 kb on - strand, within GFF2397 at 448.943 kb on - strand, within GFF2397 at 449.297 kb on - strand at 450.569 kb on + strand, within GFF2398 at 450.569 kb on + strand, within GFF2398 at 450.570 kb on - strand, within GFF2398 at 451.065 kb on + strand at 451.065 kb on + strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.165 kb on - strand at 451.189 kb on - strand, within GFF2399 at 451.210 kb on - strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.492 kb on - strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.659 kb on + strand, within GFF2399 at 451.660 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.786 kb on - strand, within GFF2399
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 448,579 + GFF2397 0.48 +2.5 448,580 - GFF2397 0.48 +0.0 448,780 + GFF2397 0.60 -0.5 448,928 - GFF2397 0.69 -0.1 448,943 - GFF2397 0.70 +0.8 449,297 - -0.4 450,569 + GFF2398 0.74 -0.9 450,569 + GFF2398 0.74 -1.5 450,570 - GFF2398 0.75 -1.2 451,065 + -0.4 451,065 + -2.1 451,066 - -0.2 451,066 - +0.5 451,066 - -0.0 451,165 - +1.8 451,189 - GFF2399 0.10 -0.5 451,210 - GFF2399 0.11 +1.2 451,491 + GFF2399 0.22 +0.6 451,491 + GFF2399 0.22 -0.6 451,492 - GFF2399 0.22 -0.4 451,539 + GFF2399 0.24 +1.7 451,539 + GFF2399 0.24 +0.6 451,552 - GFF2399 0.24 -1.4 451,552 - GFF2399 0.24 +0.2 451,659 + GFF2399 0.29 -2.4 451,660 - GFF2399 0.29 -0.2 451,687 - GFF2399 0.30 +1.2 451,687 - GFF2399 0.30 +0.2 451,687 - GFF2399 0.30 -0.4 451,704 + GFF2399 0.30 +0.2 451,704 + GFF2399 0.30 -0.2 451,705 - GFF2399 0.30 -1.4 451,705 - GFF2399 0.30 +0.8 451,705 - GFF2399 0.30 +1.4 451,705 - GFF2399 0.30 +1.5 451,705 - GFF2399 0.30 -0.2 451,705 - GFF2399 0.30 -0.2 451,705 - GFF2399 0.30 +0.3 451,705 - GFF2399 0.30 -0.8 451,705 - GFF2399 0.30 -0.4 451,786 - GFF2399 0.34 -0.5
Or see this region's nucleotide sequence